phf5a (phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350)


Basic Information

Item Value
gene id phf5a
gene name phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17201497 ~ 17205033 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49795
GCTGTGAGCAGAGCCGCGATGGTAAAAGTGAATGGGTTCCGCCGCtgtagtccacactgtgtgctAACCCGCGATGGCTAAACATCATCCAGATCTAATCTTCTGTAGGAAACAGGCCGGTGTCGCTATCGGGAGGCtgtgtgaaaaatGTGATGGGAAATGTGTTATCTGTGATTCCTATGTCAGACCTTGCACACTTGTGCGCATTTGTGATGAGTGTAATTACGGGTCCTACCAAGGGCGCTGTGTGATTTGCGGAGGCCCAGGGGTGTCAGACGCGTACTATTGCAAAGAATGCACCATTCAGGAGAAAGACAGAGACGGCTGCCCGAAGATTGTCAACCTGGGAAGCTCAAAGACTGACCTCTTTTACGAGAGAAAAAAGTATGGCTTCAAAAAGAGGTGAAGATTTCGAAGAAGGCCTTCCTGATGTAGTTTTCAAAACCCTTTCTTCTGTAaagaatcatttttttattgtgttttcagTGTATTAAAAAACTACTTGTCTTGCAATATGtcattgatgtttttttctgctaagGTGAACTAAGATCACACAGGGAGTCTGAATTATGACAGAGAATTTTTTTAATGTCgacatctttttctttattaatatgtACAACAGGGGGTTATCAGGACAGTTTAACAGATTTACATCAacagttttacattaaaacaaacctaTGTATAAAAGCATGAGGGGGATACTACAGGCAAACAGGCCAACCAACATATTCAGATAATACAAAAAGTAGAAAATTAAGTCTTaagttaataaatgtttcataaaTAGCTGAAACCAGatacattttttcttctttttgtaatTCTAATTTTGGTGATATGTAATGTtaaatttatttcaatattatattaaggtttgtttttatatatgaatCAGTACAGACCTCATGTTTAGGCTTAAGTTATCTGGTTAACAGAGAAATCCTGCTTTCTAAAATACCCAAAACCAAATACTTGTAGAACAGTCAAATATGTACATAAATGCTAACTGCTAGCTACTGAAAATATCAAACATGCTTTACAAATCATTTTCAACCAAACTctctcaaagaaaaaaaaggtaagCCACGCCTTATCTAAGACAATTTTCCAATTTTTTGGAAATTAATCTCCGACATCAAATAGGAGTGAAAGTTATTACTGTAGAACTGTAAAACATAACAGACATTGGTTAGAAATGTTTAATCCCTTTTAGCCTGTCACAGAAcagaaacaatatttaaaacatgaagAGATCATGAGATTATTGTTGATATAT
>XM_007251273.3
CTGTGAGCAGAGCCGCGATGGTAAAAGTGAATGGGTTCCGCCGCtgtagtccacactgtgtgctAACCCGCGATGGCTAAACATCATCCAGATCTAATCTTCTGTAGGAAACAGGCCGGTGTCGCTATCGGGAGGCtgtgtgaaaaatGTGATGGGAAATGTGTTATCTGTGATTCCTATGTCAGACCTTGCACACTTGTGCGCATTTGTGATGAGTGTAATTACGGGTCCTACCAAGGGCGCTGTGTGATTTGCGGAGGCCCAGGGGTGTCAGACGCGTACTATTGCAAAGAATGCACCATTCAGGAGAAAGACAGAGACGGCTGCCCGAAGATTGTCAACCTGGGAAGCTCAAAGACTGACCTCTTTTACGAGAGAAAAAAGTATGGCTTCAAAAAGAGGTGAAGATTTCGAAGAAGGCCTTCCTGATGTAGTTTTCAAAACCCTTTCTTCTGTAaagaatcatttttttattgtgttttcagTGTATTAAAAAACTACTTGTCTTGCAATA

Function

symbol description
phf5a Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U12-type spliceosomal complex; U2 snRNP; and precatalytic spliceosome. Orthologous to human PHF5A (PHD finger protein 5A).

NR:

description
PREDICTED: PHD finger-like domain-containing protein 5A-like

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0016363 nuclear matrix cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005686 U2 snRNP cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49795 True 1285 TUCP 0.36 4 17201497 17205033
XM_007251273.3 False 514 mRNA 0.45 4 17201498 17204263

Neighbor

gene id symbol gene type direction distance location
LOC103030465 kctd17,kcd17,LOC107734225,LOC107584096,LOC107692061,LOC103382075,LOC101463851,LOC105025089 coding upstream 52149 17132606 ~ 17149348 (+)
LOC103032149 NA coding upstream 69784 17123605 ~ 17131713 (+)
eef2k eef2k coding upstream 85489 17097309 ~ 17116008 (+)
LOC103032462 cunh16orf52,c16orf52.L,c17h16orf52,C20H16orf52,LOC102224510,LOC106518731,LOC108258941 coding upstream 108887 17082313 ~ 17092610 (+)
LOC103033077 LOC108412267,LOC108274277,LOC107596603,LOC107695555 coding upstream 121718 17068936 ~ 17079779 (+)
slc16a8 slc16a8,LOC107197668 coding downstream 32391 17237424 ~ 17240632 (+)
LOC103027934 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC107734239,LOC107690063 coding downstream 36661 17241694 ~ 17247513 (+)
LOC103024972 csnk1e,LOC103024972,LOC108431980,LOC107584103,LOC108273445,LOC107690058,LOC107731422 coding downstream 138904 17343937 ~ 17358593 (+)
tmem184b tmem184ba,tmem184b,LOC107690057,LOC107584104,LOC107692069,LOC107731404,LOC107554044 coding downstream 153690 17358723 ~ 17374122 (+)
tomm22 tomm22,LOC107554024,LOC107584213,LOC107692102 coding downstream 180861 17385894 ~ 17390425 (+)
G36983 NA non-coding upstream 28872 17172425 ~ 17172625 (+)
G36982 NA non-coding upstream 31641 17169351 ~ 17169856 (+)
G36981 NA non-coding upstream 34347 17166909 ~ 17167150 (+)
G36977 LOC108273417,LOC107663179,LOC107734164 non-coding upstream 36094 17155946 ~ 17165403 (+)
G36969 NA non-coding upstream 143495 17057504 ~ 17058002 (+)
G36998 NA non-coding downstream 17367 17222400 ~ 17222875 (+)
G37000 NA non-coding downstream 18302 17223335 ~ 17223700 (+)
G37001 NA non-coding downstream 19008 17224041 ~ 17224407 (+)
G37055 NA non-coding downstream 262924 17467957 ~ 17468321 (+)
G37056 NA non-coding downstream 263447 17468480 ~ 17468772 (+)
sun1 NA other upstream 160540 17000382 ~ 17040957 (+)
cabcoco1 NA other upstream 967658 16213790 ~ 16233839 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 1761340 15432829 ~ 15440157 (+)
G36439 LOC103041415 other upstream 2410664 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 2633585 14564925 ~ 14567912 (+)
cby1 cby1 other downstream 27787 17232820 ~ 17234559 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 45948 17250981 ~ 17282231 (+)
tnrc6b tnrc6b other downstream 92446 17297479 ~ 17340892 (+)
LOC103045739 LOC103045739 other downstream 500646 17705679 ~ 17708597 (+)
G37098 NA other downstream 510096 17715129 ~ 17715992 (+)

Expression


Co-expression Network