G36959


Basic Information

Item Value
gene id G36959
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16937012 ~ 16938031 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49807
CACAAACATGCTACAATATGAACATCAGAACTTAAAGCCACAGTGCCAGGGGAAAAGTATTAATATTGTGTATGACACCCAGGAGGTTGGAAAACTGCATCCGTACATCTTCGTTATTGACTCAAATAACTTATTGATGAAGTCATCTAGAATGGCAAAGAAAGCCGTCTTGTGTGACTCCCAGAGTTCCTCAAGATTCTTTGGTTTCATCTCACACCAGACATACTCAATAATGTTATGTCTGGTGATGAGGCTGGCCAATTCTGGAGCATCTAGACCTTCTTGGCTTTCAGGAATTTTGAGGTGGAGGCTGTAGTATGAGAAGGAACGCCATCCTGCTGAAGAATTTGCCCACATGTGGTTTGGAATGTAATGAGCAGCAAGCGTTTCTTGATGCTTCAGGCTGTTGCCATTCTTAGTATTTGCGGTGTTTGGGATGCAGTTCAATGGatgattcattaaaaaaatctaacttttGACAGTTTTTCACTGTCCATCCTTTCTGCAAGCTGTGGGCCTTGGCAAATGCAACAcaaattgtttgttttcttctgtTCAGTGCTGGTTTGTGAGCACTAATTCTGGCATGGAGGCCACTGTGTGTGAGATTTGACTAACTCTTCTTGTAGATACAGGGGTTTCTGGTGACCAGTTTACATGTAGCTCTGATGCAGTGAAAAAAGACTGGCACTGGAAAAAAGAGCAATGAGCTCTTCTCTAGAACACTTGTCTTACAGGGTCTGCCTGACCTGGGCTTGTCATGAACATCACTAGTTTcttcaaattagttttttttctcctctccacTTGACATTTTCATAAATTGATTGTCTGACATCTCAGCAGCAGACTACTACTTCTTCTTCAGACTTGACAGTTTCATTTTGCACCCAGA

Function

NR:

description
PREDICTED: TATA element modulatory factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49807 True 895 lncRNA 0.42 2 16937012 16938031

Neighbor

gene id symbol gene type direction distance location
LOC103044975 reep3,LOC108412837 coding upstream 184809 16715891 ~ 16752203 (+)
nrbf2 nrbf2,LOC108437426,LOC107654066,LOC107593503 coding upstream 409765 16407964 ~ 16527247 (+)
LOC103046195 NA coding upstream 477099 16457415 ~ 16459913 (+)
arid5b arid5b,LOC107727057 coding upstream 539624 16258160 ~ 16397388 (+)
rhobtb1 rhobtb1,LOC107654062,LOC107727061,LOC107695540,LOC107745661 coding upstream 761817 16149838 ~ 16175195 (+)
LOC103036473 myof coding downstream 7033 16945064 ~ 16998115 (+)
LOC103034053 rac1,RAC1,rac1a,LOC105898786,LOC108412270,LOC108437155,LOC107569188 coding downstream 109553 17047584 ~ 17054418 (+)
LOC103033077 LOC108412267,LOC108274277,LOC107596603,LOC107695555 coding downstream 130905 17068936 ~ 17079779 (+)
LOC103032462 cunh16orf52,c16orf52.L,c17h16orf52,C20H16orf52,LOC102224510,LOC106518731,LOC108258941 coding downstream 144282 17082313 ~ 17092610 (+)
eef2k eef2k coding downstream 159278 17097309 ~ 17116008 (+)
LOC103038048 NA non-coding upstream 70058 16863070 ~ 16866954 (+)
G36915 NA non-coding upstream 99048 16836526 ~ 16837964 (+)
G36899 cyp26a1,LOC103044660,LOC108412396,LOC108273895,LOC107739064,LOC107596578,LOC107695519,LOC107653962,LOC107593523,LOC107745679 non-coding upstream 144412 16733612 ~ 16792600 (+)
G36852 NA non-coding upstream 367620 16540984 ~ 16569392 (+)
LOC111192379 NA non-coding upstream 396998 16529150 ~ 16540014 (+)
G36957 NA non-coding downstream 82235 17020266 ~ 17020567 (+)
G36962 NA non-coding downstream 84737 17022768 ~ 17023415 (+)
G36964 NA non-coding downstream 86800 17024831 ~ 17025124 (+)
G36956 NA non-coding downstream 88156 17026187 ~ 17026931 (+)
G36969 NA non-coding downstream 119473 17057504 ~ 17058002 (+)
cabcoco1 NA other upstream 703173 16213790 ~ 16233839 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 1496855 15432829 ~ 15440157 (+)
G36439 LOC103041415 other upstream 2146179 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 2369100 14564925 ~ 14567912 (+)
G36371 NA other upstream 2473373 14463137 ~ 14463639 (+)
sun1 NA other downstream 62351 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 263466 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 294789 17232820 ~ 17234559 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 312950 17250981 ~ 17282231 (+)
tnrc6b tnrc6b other downstream 359448 17297479 ~ 17340892 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G424817 NA non-coding CI01000304 null 10433180 ~ 10491120 (-)
eurasian perch (Perca fluviatilis) G221359 NA non-coding NC_053133.1 CM020930.1 20469146 ~ 20469453 (-)
tiger barb (Puntius tetrazona) G147810 NA unknown NC_056719.1 CM032088.1 19025522 ~ 19103650 (-)
mexican tetra (Astyanax mexicanus) G220781 NA non-coding NC_035921.1 CM008324.1 31547740 ~ 31548009 (+)