G36962


Basic Information

Item Value
gene id G36962
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17022768 ~ 17023415 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49816
AGCTGCTTCTTATTTACCTCATTACTAAGAAAGCATTTAAAGTCACAAGATGTGTGGGTGTATGGGCCACCAATTATGACTTTCTCAGTGGCGCCTCATCTGACCCTCTCCTGGGCTTTAACAGAGTCTGGCTGGTAGCAATCCGTGGAGATTAAGTCCTGCTTGAGAATCAAATGGTTTAAGAGCTCCATACAAATCTCTCCACAGGTTGGTTGAAGGTTAGTCATCATATGTAAAAGAACATTGACATCTAGTATGAAGAGTAAGTAATCCTTAGGGTAGGTGACCTCCTCATCTCTATCTTGAAGGAGACAGTGGCCTTGATTGCTTTGTGCGCACACATTAGTGCCAAAATACTTCAGAAAACTTCATGAAAGTTTCCTCCATGATCTTGTCCAGTACTGAGAGAGCCCCTGGAATTAAAGATAGCCCCTAGCTTGATGTAGGTGGGAGAGGTCAATGTTGGCAAGAAATGCCGCAAACCATCTGTATGGATATGGCTTTAAGCCAGCTTTACATAGTGGCAGGTCAGCAATGAGCTCCAACAGGAGATAATATTATTTATGTCCATGGTCAACTGACCTCCTTTGATGCTGGAAACTTTCATGAAGTTTGTGAAGTCTTCTGGCACTAAGCAATCAAGGCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49816 True 648 lncRNA 0.43 1 17022768 17023415

Neighbor

gene id symbol gene type direction distance location
LOC103036473 myof coding upstream 24653 16945064 ~ 16998115 (+)
tubgcp2 tubgcp2,gcp2 coding upstream 79374 16929511 ~ 16943394 (+)
LOC103044975 reep3,LOC108412837 coding upstream 270565 16715891 ~ 16752203 (+)
nrbf2 nrbf2,LOC108437426,LOC107654066,LOC107593503 coding upstream 495521 16407964 ~ 16527247 (+)
LOC103034053 rac1,RAC1,rac1a,LOC105898786,LOC108412270,LOC108437155,LOC107569188 coding downstream 24169 17047584 ~ 17054418 (+)
LOC103033077 LOC108412267,LOC108274277,LOC107596603,LOC107695555 coding downstream 45521 17068936 ~ 17079779 (+)
LOC103032462 cunh16orf52,c16orf52.L,c17h16orf52,C20H16orf52,LOC102224510,LOC106518731,LOC108258941 coding downstream 58898 17082313 ~ 17092610 (+)
eef2k eef2k coding downstream 73894 17097309 ~ 17116008 (+)
LOC103032149 NA coding downstream 100190 17123605 ~ 17131713 (+)
G36957 NA non-coding upstream 2201 17020266 ~ 17020567 (+)
G36959 NA non-coding upstream 84737 16937012 ~ 16938031 (+)
LOC103038048 NA non-coding upstream 155814 16863070 ~ 16866954 (+)
G36915 NA non-coding upstream 184804 16836526 ~ 16837964 (+)
G36899 cyp26a1,LOC103044660,LOC108412396,LOC108273895,LOC107739064,LOC107596578,LOC107695519,LOC107653962,LOC107593523,LOC107745679 non-coding upstream 230168 16733612 ~ 16792600 (+)
G36964 NA non-coding downstream 1416 17024831 ~ 17025124 (+)
G36956 NA non-coding downstream 2772 17026187 ~ 17026931 (+)
G36969 NA non-coding downstream 34089 17057504 ~ 17058002 (+)
G36977 LOC108273417,LOC107663179,LOC107734164 non-coding downstream 132531 17155946 ~ 17165403 (+)
G36981 NA non-coding downstream 143494 17166909 ~ 17167150 (+)
cabcoco1 NA other upstream 788929 16213790 ~ 16233839 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 1582611 15432829 ~ 15440157 (+)
G36439 LOC103041415 other upstream 2231935 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 2454856 14564925 ~ 14567912 (+)
G36371 NA other upstream 2559129 14463137 ~ 14463639 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 178082 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 209405 17232820 ~ 17234559 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 227566 17250981 ~ 17282231 (+)
tnrc6b tnrc6b other downstream 274064 17297479 ~ 17340892 (+)
LOC103045739 LOC103045739 other downstream 682264 17705679 ~ 17708597 (+)

Expression


Co-expression Network