G36969


Basic Information

Item Value
gene id G36969
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17057504 ~ 17058002 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49823
ACATTAGTGTACAAGTGAAGTATATTTTTAATCCTGTTAAATTGCACTGAAAATTACTGAATAGCCCTAACATATtaaccactgtttacattattaaaacacaacaaattCCTCAAGATATAAAAAGTGATATTTGTGGAGAACTTCCAGATTAATCGCTTGCTTCTGTAGGACAGTGGTTTCTTTAACACTAGGACTAAAACCCAGTTGTATATTCAGTGGGCCCAAGCTTTTCTCAGGGTTCAGCTACATTTGTCCCCCAGAGTCCACTCACTCGTTCCTTACCTGCAACATGAGCACCAGGCTTAACCCAGTTCCCAAAAAGTACAGGTTCACTTGAGCTGGTGACAGTGATGATTACGTCGGCTCCATTAACGGCTTCTTTAACAGATGAACACACTGTGACGGGACCCTTGACACTGGCAGCAAATCGTGTTGCCGACTCCATTCTCCTGCTCCACACACGGACCTGAAGAAGACACAGCAACTAGGATTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49823 True 499 lncRNA 0.42 1 17057504 17058002

Neighbor

gene id symbol gene type direction distance location
LOC103034053 rac1,RAC1,rac1a,LOC105898786,LOC108412270,LOC108437155,LOC107569188 coding upstream 3086 17047584 ~ 17054418 (+)
LOC103036473 myof coding upstream 59389 16945064 ~ 16998115 (+)
tubgcp2 tubgcp2,gcp2 coding upstream 114110 16929511 ~ 16943394 (+)
LOC103044975 reep3,LOC108412837 coding upstream 305301 16715891 ~ 16752203 (+)
nrbf2 nrbf2,LOC108437426,LOC107654066,LOC107593503 coding upstream 530257 16407964 ~ 16527247 (+)
LOC103033077 LOC108412267,LOC108274277,LOC107596603,LOC107695555 coding downstream 10934 17068936 ~ 17079779 (+)
LOC103032462 cunh16orf52,c16orf52.L,c17h16orf52,C20H16orf52,LOC102224510,LOC106518731,LOC108258941 coding downstream 24311 17082313 ~ 17092610 (+)
eef2k eef2k coding downstream 39307 17097309 ~ 17116008 (+)
LOC103032149 NA coding downstream 65603 17123605 ~ 17131713 (+)
LOC103030465 kctd17,kcd17,LOC107734225,LOC107584096,LOC107692061,LOC103382075,LOC101463851,LOC105025089 coding downstream 74604 17132606 ~ 17149348 (+)
G36956 NA non-coding upstream 30573 17026187 ~ 17026931 (+)
G36964 NA non-coding upstream 32380 17024831 ~ 17025124 (+)
G36962 NA non-coding upstream 34089 17022768 ~ 17023415 (+)
G36957 NA non-coding upstream 36937 17020266 ~ 17020567 (+)
G36959 NA non-coding upstream 119473 16937012 ~ 16938031 (+)
G36977 LOC108273417,LOC107663179,LOC107734164 non-coding downstream 97944 17155946 ~ 17165403 (+)
G36981 NA non-coding downstream 108907 17166909 ~ 17167150 (+)
G36982 NA non-coding downstream 111349 17169351 ~ 17169856 (+)
G36983 NA non-coding downstream 114423 17172425 ~ 17172625 (+)
G36998 NA non-coding downstream 164398 17222400 ~ 17222875 (+)
sun1 NA other upstream 16547 17000382 ~ 17040957 (+)
cabcoco1 NA other upstream 823665 16213790 ~ 16233839 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 1617347 15432829 ~ 15440157 (+)
G36439 LOC103041415 other upstream 2266671 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 2489592 14564925 ~ 14567912 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 143495 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 174818 17232820 ~ 17234559 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 192979 17250981 ~ 17282231 (+)
tnrc6b tnrc6b other downstream 239477 17297479 ~ 17340892 (+)
LOC103045739 LOC103045739 other downstream 647677 17705679 ~ 17708597 (+)

Expression


Co-expression Network