G51188


Basic Information

Item Value
gene id G51188
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1849827 ~ 1854511 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58312
CTCTGATTGGTCAGATGGCCCAGTCTGTTGTGATTGATCTCCCGCTAATAGCGTCTCAGAAACCAAATGCCCTTTACCTCTGAATTTCAGCTCCAGAGGCTTGATACACAGTAATACGAACAGTTATTTTGCCGTTGGTTTTTCTGTATCAATTACAGCTCGAGTCCTTATCCTTTTGAAGTGCATGCAGTGGAAGCACAGTGGTGAAAACAACGTCTTTCGACATGTCGACAACACAAACCAAACTCTTCCAGGGCCTCGGCTACAACTACAGGGTGGGTTTGAGGGCGGGTCAAAGTAGTGTTTCCATCCACAGTTGCGTATTTAATTTATGCGCAAATTTGGAATATCGCATAAAACATTTGCAAATAAAGCACTGTTTCCATCCAGAGAGTTGAAGAGAACAAAAACATCACTTCCTGATAAACTGGCACTAAATATCACTTGTTGATGCAGTAGAAGCCACTGTACATAATAATAATATAAATTATTTGCGCCTAAGAGTGCGCAGACAAAATGCAATAAACGCTGTCATGTTATCTTGCATTCAGGTGCTTGGTGTTTGTGAACGCAATTGTGTGAGGCACTTCTGGGAGGGAATTATACCGAACCACTTTAACGACAGACTTTGCTCAGGCTTTACAGAATGTCCAAAACAGCATTTTAGATGCTATGCAACGAGATCGGTCCGCTGGTTGGTCCAATTATGCCATCCCATTGCAAAGTCACATGTCTTTTTTTGATGCGCATCAAGGAATTTATTCGTATCGCATAAAAAATGTATCGAACTCATTTGAGCGCATACGTTTTTTTTATACACATTTTTAGAATTTATACGCATCTTGGCGTTCCATCAAGCATTTTTTTATGCGATATCCCAAAATGTGCATTAAAAATAGGTGGATGAAAACATAGCTACTGATCGCGGGCAGCCAATGAAGACCATCATTTGTTGTGCGCTTGGATCTTTAAAGGGGTCATATAATGCTACATTTACAAGATGTAAAATAAGTCTCTGATGTCCCCAGAGTGGGTATGTGAAGTTTTAGCTCAAAATACCCCACAGATCATTTTTTATAGCATGTTAAATTTGTCTCTTTTTGAGGGTGAGCAAAAACCCTGTTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCTCAAGAAGAGGGTGGAGTGTCAAGAGCTCGTGTTAGCAGCGCCGATTACCTCACGTAGACTCACTGAAAATGTCAGAAACTGTTCAGCCTTTTATGTTCAAACTGGAGTCAGACAATGATGGAGAGACTTAAGAAGAAGTGACAACATGTAGAATGCAACAGGACGTTTCTGAATGGTTAGTTGATGAATTTATGTAGCTGATGTGGAGTTAACTATCTTAAAGTCATTCATTAGCATATTCTGTCATGGTAATCTATAAATCGCTCGTGTGGGAACTGTTGTAAGATGCCTAGAGCCAGAGAATATATGCTGCATCAAGATAAAACAGGTATAGTTTAGTTTATTAGTTAATTACAGTTATAACTTATGTTGTCAGCTTGCTTTTATGACATGCTTTTGCATTTGTGTTACGTACTGTATTGCAACAACATGGCCTCACCCCTTTGTTGCGCATTCTCTGGGGCAGGTTTTATGTAAATTTTAGGGTTAGTGATGTCACCAACCCGGGAAGAAGCTTGTTGTAGTCCCTTCCAGCCATTTGTTGTAGTCCTTAAACAGAGAATTCTTTAAAAGAAAATAACTCCTTTTTCTTTGAACTTTGAGCGTCGTAACTTTGCAGATGTTGTTTATGCTCTAACAGCAACATTACACACTAACTAAAGTTAAAAAAGTGAAATCATAATCAACCACCCCTTTAAGACTTTGCAGACTTTTACATTCACAAACATCTTTACTACACACTGCATCAAAGATAATATTCGAAAAAGCATAATAGGGGCTATTTATCAGATTGTTGTACACAAAAAAAAAAAAAAAAACACTTTCAATGCTTTCCAAATGGGATATCTGAAACATGTGTACATACTGGGGACTTATTCATTGTTGATATGTTTTTTAGCACTTTTTAAACAGCTGTAGCATCAACAGAGGTAAAACCATTAAGCTGCATTGAGACATTTTTCAAAGGACTGCAAATAGTACACAACTTACTACTAATGCTAAAGTTCTGTTGACCTAGATTCTCAATTAACTAGCCTACCTTTACCAAATCCTAGAATCATATTTACTAATCTATATGAAAAATCACATTACTCAGAAAAAGAAAAAGAAAGAGAAGAAACCAAGACAGTTATTTCTTTTATGACCACATTTTCAATAAAGCTGTAGAACAAAATGTATCTCGAAAAAATATTTGAAACAATAGACCCTTTTCACATTTCCGGGTTCCTCAGAAGCGGTAAAATCTATAGCAATGAAAGAGAGAATACATACAATAATACTAAGTATATTGTTATAAATGTACATATGATTTTTAAAAATGAAAATATAAAAAACTTTGCAGGATTTACGATATTGATGACCGTTAAAACGCCTCATCACAGTCCGTGAAAAGGGTCTATTCTGAAAACTATTTGTTTTATAACTTTTAAAAGCAGTTATTTAGCCCTCAGATAAGTGTCCTTGTCTGTTACCCTTACCTGTTTGCACCATCAACACTCTTGCCTGACTTCAGGAGGGTAATCAAATAAGAGGCTGCGTGAATCAGGGAATCCAACAACAAAACTGACCCCTGATCTCCCCTTAAGTCACCACTGCAGCAAACTACAGCCACCTCAGCAGTCATGTACTTCAAGGACACGCTGGAGTCTCTCAATAATTAGACAGTGTTCATACACAAACAGCATTCTAATAGCAGTCCCACATTCCAATTACATAAACCTGAGGCTTTCAAATTGTGAAACAGATTCACAGAACAATAATTTGATCATTATAGAATTTAAATGGGTCAAATAATATATTTTTAGGACCCGAGCACTGATGGTGTGAGAACCATTTTGGAATTGCTCGGCCAATTATTCTTTTTCTCCGAAATGAATCACATTTGTGAGGGCCTAAACATGCCCAAAAACTCATGAAGCTTTGCACACGCATCAGATGTGGTGAAAATTTACATCTGATATGGATTTCAGAATTAGGTGTGGCAAAATGGCTCGATAGCACCACCTACAAAATTTCAATTAAGCGCCCTTCGTGCTACGTTTCACATACACCTGACCTGAAGACATCTACATGCCAATATTCAGTCACAGTCATAGCGCCACCTGTGGGTAACAGGAAATGACATGTTTTACACTGTGATTAACTCCTCAAAGAGATTTAGTCTTAGATCAGTCTAATCTTAAGGCCTTCGCGATGTTAAATTGCAAAGATCTTGAGTTTTCGTTGAAGGGTGTGTCCGTGGCAGCTGACAAAGTCTGATGTTTCGCCATGAAAGGTCAGTCACATTTTTGAGGGCCTAAACATGCTCGAAAACTCATGAAACTTTGCAGATGCGTCAGAAGTGTATGTCTAATATGGGTTTCAGAATTAAGTGTGGCAAAATGGCTCGATAGCGCCACTTACAAAATTTCAATTAAGCGCCCTTCGTGCTACGTTTCACATACAGTTATGAAATTTGGTAGACACGTGTAACAGCCCAATACCTACAAAAAAGTCCCCGGGAGCGAAATCTGAAAACCAACAGGAAGTGAGATATTTTGAATTTTCTTTGCAAAATTTGTGCAGTTTTTGCCATTTCCAGACATTGTACTTTAACGAACTCCTCCTAGAGCTTTAATCAGATCAACATCATATTTGGTCAGTCTAATCTAAAGCCCTTAGTGACATTAAATTGCAAAGATCTTGAGTTTTCGTTGGAAGGTGTGTCTGTGGCGGCCTGACAAAGTCTGATGTTTCGCCATGAAATAGGAAGCTGTAGTAACAGGCATACAATGTCCGATCTGCGCCAAACTTCACATGTGTGATAAGAGTCCAGGCTTAAAGACATCTATATGCCAATATTCAGTTAGTCATAATGCCACCTGCTAGCAACAGGAAATGGTATGCTTTACACTTTAATTCACTCCCAGAAACACATTTCAATATGCCACGAAGTACCAAACATACTACAAACACGTTAAATCATGAAACACTTGGCTAAGTGCTAATGTATGCGATTAACGCCACAAAACAGGAAGTTCTAGTAACTCAGGCATACAATGTCCGATCGGCTCCAAACTTTACATGTTTGATAATAGTCCTGGCCTGAACACATCTACATGGCAATATTCAGTTACGGTGAAAGCGCCAACCTTTAATTGGTTTTGTTGTTGTTTTTTTCCATTGCGGTACACTTACTATGTTAGTGTTACTAACTATGTTAGTCAGGTTTTCTTACGCCAAAATATTCATAATTTAGTTTTTTCATTTTTTTTTTTTCCATGCTGTGCCTTTAAATGAATATTTCTGGTTCATACAAGTTAAGCTCAAATCAACAGCACTTGTGGTATACTATTAAAGTGATAGTTCACCCAAAAATGAACATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58312 True 4529 lncRNA 0.38 2 1849827 1854511

Neighbor

gene id symbol gene type direction distance location
CI01000009_01733394_01738937 ITGBL1 coding upstream 110359 1731294 ~ 1739468 (+)
CI01000009_01692563_01725364 ITGBL1 coding upstream 124463 1692563 ~ 1725364 (+)
CI01000009_01570544_01595199 NA coding upstream 254361 1570079 ~ 1595466 (+)
CI01000009_01454610_01484907 NA coding upstream 363999 1453708 ~ 1485828 (+)
CI01000009_01431700_01434463 NA coding upstream 415285 1429873 ~ 1435328 (+)
CI01000009_01892219_01893628 NA coding downstream 37708 1892219 ~ 1893754 (+)
CI01000009_01897343_01919208 PIKFYVE coding downstream 42832 1897343 ~ 1919516 (+)
CI01000009_01966898_01976924 COQ10B coding downstream 112387 1966898 ~ 1977734 (+)
CI01000009_01990700_01991267 HSP10, HSPE1 coding downstream 136189 1990700 ~ 1991387 (+)
CI01000009_01993176_01999494 MOBL3, MOB4.S, HSPE1, MOB3, HSPE1-MOB4, MOB4 coding downstream 138665 1993176 ~ 1999873 (+)
G51110 NA non-coding upstream 192457 1657059 ~ 1657370 (+)
G51062 NA non-coding upstream 366875 1482718 ~ 1482952 (+)
G50937 NA non-coding upstream 369361 1446595 ~ 1480466 (+)
G51193 NA non-coding downstream 10933 1865444 ~ 1865801 (+)
G51194 NA non-coding downstream 15131 1869642 ~ 1869855 (+)
G51195 NA non-coding downstream 21471 1875982 ~ 1876208 (+)
G51196 NA non-coding downstream 24126 1878637 ~ 1878848 (+)
G51197 NA non-coding downstream 25600 1880111 ~ 1880357 (+)
G51122 NA other upstream 167861 1680146 ~ 1681966 (+)
G50920 NA other upstream 1079594 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 1754040 94371 ~ 97230 (+)
G51274 NA other downstream 400588 2255099 ~ 2350486 (+)
G51529 NA other downstream 1207522 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 1348261 3202207 ~ 3208984 (+)
G53388 NA other downstream 3667731 5522242 ~ 5540638 (+)

Expression


Co-expression Network