cby1 (cby1)


Basic Information

Item Value
gene id cby1
gene name cby1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17232820 ~ 17234559 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49869
TCCGGAAGTAGCTCGGTGTTTACACGGTTTTGTGTGGAGGTCTAAGGGTTTTGTTCTTGCAGTGCAGAAGAGCCACAGCTTTAAGCCAAAATGCCTCTTTTTGGCAACACATTCAGTCCTAAGAAGACACCACCTCGAAAATCAGCATCTCTCAACAGTCTTCACACATTAGATCGATCCACTAGGGAGGTAGAGTTGGGTGTGGAGTATGGAGCACCTGTATTGAATATTGGAGGTCAGAGTTTAAAATTTGAAGAAGGACAGTGGATTACCGAGTCAGGAGGCAACATGTCCAGCAAAGAGGTGCAGAAGCTGAAAAAGAGAAACCTTCAGTTAGAAGAGGAAAATAATCTTTTGAAGCTTAAGATTGAACTATTGTTGGATATGCTGACAGAAACCACAGCAGAGTCACATCTAGTACAGAAGGAACTAGAAGACATGAAGAATCATtacaaaagaaagaagtgatgaaaaagaaaaggatttcAAATCTTGATCTTATGTTTTGTGAATTTTTGTAAATGTCTACAGTTGATTGGAAACCAAACAAAAGAGATGTTAATTTATACACTGcagatatgtatatatttttactttatatgaTCATTGTATGAAATATTTGTTATTTGGTTAGTTTTGTGTGGGGGAGGTGCAGCCTATGTAATGGTTTGCCTTTCCTTGGATGAGTAACTTAGTCTTCATGCTTCTTGTATATCTGGTTAATTAATTCTGTTTTGGCATCTGATCTTATCACCACCTTTTTTGAGTTCTTATAATATTTGACATATGTCAGACACTAAATGgtattgttttatatagattttattttttagattttatgaaCAAAAGACAATAGAAATCACTACTACTGTAGTGCACAGTAATTCCATTAATAAGATTGGTAAAAGGGGAGCACATCCAAGGTGAGCATACTTTTTATGGGTGTGGCATTTTTGTATCAGGTCcttcttaataaataaacatcaaTGTCCA
>XM_015606315.2
GTTTTCAGTATGAAGTATATTGTAAGggacttttattaaatgcatcGTTGCTAAGCAGCTCCGGAAGTAGCTCGGTGTTTACACGGTTTTGTGTGGAGGTCTAAGGGTTTTGTTCTTGCAGTGCAGAAGAGCCACAGCTTTAAGCCAAAATGCCTCTTTTTGGCAACACATTCAGTCCTAAGAAGACACCACCTCGAAAATCAGCATCTCTCAACAGTCTTCACACATTAGATCGATCCACTAGGGAGGTAGAGTTGGGTGTGGAGTATGGAGCACCTGTATTGAATATTGGAGGTCAGAGTTTAAAATTTGAAGAAGGACAGTGGATTACCGAGTCAGGAGGCAACATGTCCAGCAAAGAGGTGCAGAAGCTGAAAAAGAGAAACCTTCAGTTAGAAGAGGAAAATAATCTTTTGAAGCTTAAGATTGAACTATTGTTGGATATGCTGACAGAAACCACAGCAGAGTCACATCTAGTACAGAAGGAACTAGAAGACATGAAGAATCATtacaaaagaaagaagtgatgaaaaagaaaaggatttcAAATCTTGATCTTATGTTTTGTGAATTTTTGTAAATGTCTACAGTTGATTGGAAACCAAACAAAAGAGATGTTAATTTATACACTGcagatatgtatatatttttactttatatgaTCATTGTATGAAATATTTGTTATTTGGTTAGTTTTGTGTGGGGGAGGTGCAGCCTATGTAATGGTTTGCCTTTCCTTGGATGAGTAACTTAGTCTTCATGCTTCTTGTATATCTGGTTAATTAATTCTGTTTTGGCATCTGATCTTATCACCACCTTTTTTGAGTTCTTATAATATTTGACATATGTCAGACACTAAATGgtattgttttatatagattttattttttagattttatgaaCAAAAGACAATAGAAATCACTACTACTGTAGTGCACAGTAATTCCATTAATAAGATTGGTAAAAGGGGAGCACATCCAAGGTGAGCATACTTTTTATGGGTGTGGCATTTTTGTATCAGGTCcttcttaataaataaacatcaaTGTCCAATTTCTTGA

Function

symbol description
cby1 Orthologous to human CBY1 (chibby family member 1, beta catenin antagonist).

NR:

description
protein chibby homolog 1

GO: NA

KEGG:

id description
K23402 CBY1; protein chibby 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU49869 False 993 TUCP 0.36 5 17232879 17234550
XM_015606315.2 True 1061 mRNA 0.36 5 17232820 17234559

Neighbor

gene id symbol gene type direction distance location
LOC103030465 kctd17,kcd17,LOC107734225,LOC107584096,LOC107692061,LOC103382075,LOC101463851,LOC105025089 coding upstream 83472 17132606 ~ 17149348 (+)
LOC103032149 NA coding upstream 101107 17123605 ~ 17131713 (+)
eef2k eef2k coding upstream 116812 17097309 ~ 17116008 (+)
LOC103032462 cunh16orf52,c16orf52.L,c17h16orf52,C20H16orf52,LOC102224510,LOC106518731,LOC108258941 coding upstream 140210 17082313 ~ 17092610 (+)
LOC103033077 LOC108412267,LOC108274277,LOC107596603,LOC107695555 coding upstream 153041 17068936 ~ 17079779 (+)
slc16a8 slc16a8,LOC107197668 coding downstream 2865 17237424 ~ 17240632 (+)
LOC103027934 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC107734239,LOC107690063 coding downstream 7135 17241694 ~ 17247513 (+)
LOC103024972 csnk1e,LOC103024972,LOC108431980,LOC107584103,LOC108273445,LOC107690058,LOC107731422 coding downstream 109378 17343937 ~ 17358593 (+)
tmem184b tmem184ba,tmem184b,LOC107690057,LOC107584104,LOC107692069,LOC107731404,LOC107554044 coding downstream 124164 17358723 ~ 17374122 (+)
tomm22 tomm22,LOC107554024,LOC107584213,LOC107692102 coding downstream 151335 17385894 ~ 17390425 (+)
G37001 NA non-coding upstream 8413 17224041 ~ 17224407 (+)
G37000 NA non-coding upstream 9120 17223335 ~ 17223700 (+)
G36998 NA non-coding upstream 9945 17222400 ~ 17222875 (+)
G36983 NA non-coding upstream 60195 17172425 ~ 17172625 (+)
G36982 NA non-coding upstream 62964 17169351 ~ 17169856 (+)
G37055 NA non-coding downstream 233398 17467957 ~ 17468321 (+)
G37056 NA non-coding downstream 233921 17468480 ~ 17468772 (+)
G37058 NA non-coding downstream 235765 17470324 ~ 17470774 (+)
G37060 NA non-coding downstream 240859 17475418 ~ 17475771 (+)
G37066 NA non-coding downstream 274858 17509417 ~ 17509619 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other upstream 27787 17201497 ~ 17205033 (+)
sun1 NA other upstream 191863 17000382 ~ 17040957 (+)
cabcoco1 NA other upstream 998981 16213790 ~ 16233839 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 1792663 15432829 ~ 15440157 (+)
G36439 LOC103041415 other upstream 2441987 14789380 ~ 14790833 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 16422 17250981 ~ 17282231 (+)
tnrc6b tnrc6b other downstream 62920 17297479 ~ 17340892 (+)
LOC103045739 LOC103045739 other downstream 471120 17705679 ~ 17708597 (+)
G37098 NA other downstream 480570 17715129 ~ 17715992 (+)
G37099 NA other downstream 483672 17718231 ~ 17719376 (+)

Expression


Co-expression Network