G37068 (lsm12)


Basic Information

Item Value
gene id G37068
gene name lsm12
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17509967 ~ 17517589 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49972
CAGAATTTTTGTTCCTTTATTTTAGAAAACGTCCGTTTTTTAAAGTGTGGCATTTCAagtcacatttttgtttaaaatacagaaaatacagacaCATGAACATGAAGATggcaaaaaaggaaaatttgggggaagaaaacaaaaagctaACAAGCTTTTCtgactgtttgttttttttttccttttttgacaGAATGGAATAGAAGGCGAAGGAGGGATGAAAATGAAAGGAGAGAAGAATAGGAGAGAAGGAGGAAGAAgggccagagagaaagagagagatagagagagagaaagatgatgGAAGTTAGTCAGGAAAACTATGGGTTTCTTAATAATTGGTATTTTAAATTATCTTTATAAATCTAATTTTAGAATTAACTCTTTGCACCCtcactttttctgatttttttttttttttttttaatgtttttcatttgtttttgtttgatcTTGCAGACCCTGGGGTCTTGGTATCCCCCGCCCTCCGACTGCGGCGCTGAAGGGGAGGGGTAGGAGAGAGGGGAGCGCCGTTCTCGTCCGGCTCTCAGAGCGCTGATGCCCGTGGTGCCCTCTCTGGCCGAACCACGCTCGCCCCTTCCCCCCTCAGGAAGATAACGACGAGTCCTTCTGTGTTTGCTGTGCTTGTGAACGCTGCATCGACTTCTGAGATTCCAcatctttaaaatgtttctcaaCCTGCgagagaggaggaaagaaaaaaaaaaaagaatattgcaACTCAGTTTTCACATA
>TU49973
CAGAATTTTTGTTCCTTTATTTTAGAAAACGTCCGTTTTTTAAAGTGTGGCATTTCAagtcacatttttgtttaaaatacagaaaatacagacaCATGAACATGAAGATggcaaaaaaggaaaatttgggggaagaaaacaaaaagctaACAAGCTTTTCtgactgtttgttttttttttccttttttgacaGAATGGAATAGAAGGCGAAGGAGGGATGAAAATGAAAGGAGAGAAGAATAGGAGAGAAGGAGGAAGAAgggccagagagaaagagagagatagagagagatagagagagagatagagagagagaaagatgatgGAAGTTAGTCAGGAAAACTATGGGTTTCTTAATAATTGGTATTTTAAATTATCTTTATAAATCTAATTTTAGAATTAACTCTTTGCACCCtcactttttctgatttttttttttttttttttaatgtttttcatttgtttttgtttgatcTTGCAGACCCTGGGGTCTTGGTATCCCCCGCCCTCCGACTGCGGCGCTGAAGGGGAGGGGTAGGAGAGAGGGGAGCGCCGTTCTCGTCCGGCTCTCAGAGCGCTGATGCCCGTGGTGCCCTCTCTGGCCGAACCACGCTCGCCCCTTCCCCCCTCAGGAAGATAACGACGAGTCCTTCTGTGTTTGCTGTGCTTGTGAACGCTGCATCGACTTCTGAGATTCCAcatctttaaaatgtttctcaaCGATTTTGCGTATATGACTTAAAGCGCTTCCTTCTTTTCCTTTGCAGTTCTCCACCTGATACGGCGGTGAGATTACGACGTCATCCATCACAATAATGTTCTTCTCCTGCCATTTACAGTCTTTGATGGTTTTATGTATAGTCTGGAATAGTTGCTGGCCCTCAACTGAAACCCCAGCACTGATTGCGTAGGCTTGGGATAACTTGTCTTCCTTTTCCGTCCTCGCCCGACTGGCAAGCTTGCCCACATTCAAAGATGCTAGAGGAGGTGGTGTCTCAGTACGATCATTAATGATTTCCACCTCTGAAACGTAGGCTAAGTTAACCAGGATGACGTCACTGAGGTTGGGCTTGCCACTGGAAGAAGCACATTTCAGAGTTAACATCTTGGTCTGGTAATCAAAGGCCACAACCTCTCCCTGCAGGCGCTGGCCCAGGCAGGTGAGGCAGGAGACGCTGCTTCCCACGCTGAAATACTCCCCC

Function

symbol description
lsm12 Orthologous to human LSM12 (LSM12 homolog).

NR:

description
PREDICTED: protein LSM12 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49972 False 756 lncRNA 0.40 2 17509967 17510744
TU49973 True 1202 lncRNA 0.44 5 17509967 17517589

Neighbor

gene id symbol gene type direction distance location
tmem101 tmem101,LOC107708986,LOC107693682 coding upstream 18903 17483919 ~ 17491064 (+)
LOC111188179 NA coding upstream 85773 17423685 ~ 17424194 (+)
LOC103022777 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding upstream 100033 17397153 ~ 17409934 (+)
dmc1 dmc1 coding upstream 113910 17391730 ~ 17396057 (+)
tomm22 tomm22,LOC107554024,LOC107584213,LOC107692102 coding upstream 119542 17385894 ~ 17390425 (+)
g6pc3 NA coding downstream 3908 17521497 ~ 17534277 (+)
pagr1 pagr1,LOC107708911 coding downstream 279245 17796834 ~ 17802617 (+)
cabp5 cabp5a,LOC108425940,LOC107708978,LOC107562016,LOC107693687,LOC105909107 coding downstream 361006 17878595 ~ 17888249 (+)
nif3l1 nif3l1 coding downstream 379201 17896790 ~ 17903709 (+)
LOC103030008 NA coding downstream 399275 17916864 ~ 17924970 (+)
G37066 NA non-coding upstream 348 17509417 ~ 17509619 (+)
G37060 NA non-coding upstream 34196 17475418 ~ 17475771 (+)
G37058 NA non-coding upstream 39193 17470324 ~ 17470774 (+)
G37056 NA non-coding upstream 41195 17468480 ~ 17468772 (+)
G37055 NA non-coding upstream 41646 17467957 ~ 17468321 (+)
G37092 NA non-coding downstream 167123 17684712 ~ 17709836 (+)
G37089 NA non-coding downstream 176201 17693790 ~ 17698652 (+)
G37096 NA non-coding downstream 195872 17713461 ~ 17713687 (+)
G37097 NA non-coding downstream 196296 17713885 ~ 17714091 (+)
G37108 vps25 non-coding downstream 274437 17792026 ~ 17793801 (+)
tnrc6b tnrc6b other upstream 169075 17297479 ~ 17340892 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other upstream 227736 17250981 ~ 17282231 (+)
cby1 cby1 other upstream 275408 17232820 ~ 17234559 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other upstream 304934 17201497 ~ 17205033 (+)
sun1 NA other upstream 469010 17000382 ~ 17040957 (+)
LOC103045739 LOC103045739 other downstream 188090 17705679 ~ 17708597 (+)
G37098 NA other downstream 197540 17715129 ~ 17715992 (+)
G37099 NA other downstream 200642 17718231 ~ 17719376 (+)
G37131 taok2,LOC108425925,LOC108273910 other downstream 340328 17857917 ~ 17863066 (+)
G37152 LOC108425993 other downstream 434991 17952580 ~ 17960304 (+)

Expression


Co-expression Network