G37089


Basic Information

Item Value
gene id G37089
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17693790 ~ 17698652 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49996
CCTAGGCTCCCTCTACAGTTGCGGAGTGTGATTCTCTTTTATAACACTGCCATTGTGAATCATGCTGACTTTAATAAAGAGAATGAAGTCTTTGTCATTGTCACTCGTTGCTTTAAACACTACACCTAAATATTAATCCActcaacaaaaataacaaataatgttgatgtaatactttaaaaaatattcatttgtaatttaaaataattgtgtTTTAACTGAAACGAAACTGCAGATCAGTTGTTTCAGCcaatttatgctttttttattttttttaaacatcctaTTGGTGGCACTACTGTTCTTGGGTCCACAGAagttcaaaataataaaataatccagccatttattaactttaaaaaagtcaaataaaagagaaaggaTGAGCTTAGTCccatttatacattaaaaacagcCCGCCCTGATTAAATAAACCTTCTATAAATCAGCAGCAATATAAACTAAAACCTATATAAGAACAAATTTATGGGCGGAGCATGTAGAGATCAATTAAGAGTGAGTAGCTCATGAAACCTCGTTCACAGACTAAACATCTGGCCACTCGGGTAGGTTGTGACTATGCCTTTACTCCAGCCCAAGTCATTTACTGTACAttgtcctcctcctccaggcCGCAGAGCGTCCATATGATAACTGAAGACGGTCCATATCAGAGCAGGACATCACTGAGAGCTGCAAACCACCGGAGCTGTCCTCCTGCTATTGTTGCCATGGAACAAACTGCAATATCTGAGCACATCGCTGTTTCTCAGTGGGAGGCTGGAACGTCGATTCCACTTTTATTTACGtccATCTCCTTTATCTTCTGACTTGCCACGaatagtagatacagatcccctcactcagacgaagtctgctggctaatcctgctgtgtaatGCTCTGTGTGAGGGTCTCAAACAAAATGATCAAAATGGTGTTtcatcaactgatctagtgggtggggctctggtgagggttgatgggtgaggggtggtgccaggggtGGTTCAATGCAGGTTTGCTTGTTGTGACGTCAGAATAAGAGAGCATCCATATGATTACAGACagcaaactctttcagctgatttaaagaaaacagatagatttttttggtgtttggagtgtttatagggacAGTTGAGACCCAGGTGAGaatacaaatgcacacaaaaaagtgagttttgcattaTATTTACCCTTTAAGGGCCCTTTAACCCTGTGTCCTCTAAAACAGATTGTTTCACACAAAACCTATAACAAACAACTTATTTCgcattttaaaaatctaatttttaatttggttgTACTACTATTGCCACTTGAGttaatttgcaaaaacaaaagtatgtttaaagaaCAGAACCTATACATTTTTCGCAAAtctctttatactttatatattcaAGGTTTCCCCTTTCTCTCAGGCTTTTGGTTGGGCTCAGAGAGTGCAAGTCAGGAGGTCAGGCTGAAAGGACACAACCATGACAACACTGTTTACCACTGACCACTAGCAGAACAGACAAACATATGATatgtgaaattaaattaatataagaataagtattaaattatatttattctgAACAGCTTTCCATAGTTTTTCCCTCAGTCTCACTTGAGACTTAAGACTTAAGACTTTCTGCTGCAGTTCTGCTGAACATAAAAGGTTACCCAGCAGTTATGGCGCTCTGTTCTTGGTGATGTGCATCAGAGTAACATGAGCAAAGTCTATGATGCTCCTTGCTGAGATGCCAGTGATCAGAGTGAGCTCCTCCACCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49996 True 1782 lncRNA 0.39 4 17693790 17698652

Neighbor

gene id symbol gene type direction distance location
g6pc3 NA coding upstream 159513 17521497 ~ 17534277 (+)
tmem101 tmem101,LOC107708986,LOC107693682 coding upstream 202726 17483919 ~ 17491064 (+)
LOC111188179 NA coding upstream 269596 17423685 ~ 17424194 (+)
LOC103022777 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding upstream 283856 17397153 ~ 17409934 (+)
dmc1 dmc1 coding upstream 297733 17391730 ~ 17396057 (+)
pagr1 pagr1,LOC107708911 coding downstream 98182 17796834 ~ 17802617 (+)
cabp5 cabp5a,LOC108425940,LOC107708978,LOC107562016,LOC107693687,LOC105909107 coding downstream 179943 17878595 ~ 17888249 (+)
nif3l1 nif3l1 coding downstream 198138 17896790 ~ 17903709 (+)
LOC103030008 NA coding downstream 218212 17916864 ~ 17924970 (+)
LOC103029386 NA coding downstream 330446 18029098 ~ 18039806 (+)
G37068 lsm12 non-coding upstream 176201 17509967 ~ 17517589 (+)
G37066 NA non-coding upstream 184171 17509417 ~ 17509619 (+)
G37060 NA non-coding upstream 218019 17475418 ~ 17475771 (+)
G37058 NA non-coding upstream 223016 17470324 ~ 17470774 (+)
G37056 NA non-coding upstream 225018 17468480 ~ 17468772 (+)
G37096 NA non-coding downstream 14809 17713461 ~ 17713687 (+)
G37097 NA non-coding downstream 15233 17713885 ~ 17714091 (+)
G37108 vps25 non-coding downstream 93374 17792026 ~ 17793801 (+)
G37120 maz non-coding downstream 123759 17822411 ~ 17828668 (+)
G37137 NA non-coding downstream 194010 17892662 ~ 17892962 (+)
tnrc6b tnrc6b other upstream 352898 17297479 ~ 17340892 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other upstream 411559 17250981 ~ 17282231 (+)
cby1 cby1 other upstream 459231 17232820 ~ 17234559 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other upstream 488757 17201497 ~ 17205033 (+)
sun1 NA other upstream 652833 17000382 ~ 17040957 (+)
LOC103045739 LOC103045739 other downstream 7027 17705679 ~ 17708597 (+)
G37098 NA other downstream 16477 17715129 ~ 17715992 (+)
G37099 NA other downstream 19579 17718231 ~ 17719376 (+)
G37131 taok2,LOC108425925,LOC108273910 other downstream 159265 17857917 ~ 17863066 (+)
G37152 LOC108425993 other downstream 253928 17952580 ~ 17960304 (+)

Expression


Co-expression Network