G37108 (vps25)


Basic Information

Item Value
gene id G37108
gene name vps25
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17792026 ~ 17793801 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50021
TCAATAGGAAGTGTTAATTCCATTACAATATCACTAAAAAGTACACATTTACCAATAAATGTGTTCTGGTTATGAGCTGCATAGTGAAACTGGCTTAAGATCTACGATAAACCGACCACCTTCTTTActtccaaaaaacaaaattatgcCTTTATGTGATTAATGGAAAACTCACCCACTGATAAATCAGCTTGCCCCACTCCTCAGGTCTTCGCCACATGATTAAACAGCGCGTTTTGTTTTTGTCCATCCATTCCAGGTTCCCTtttttttctcAGCTCCTCAAAGACAACCTGTATAGCCTCAACAGAGAGCTTTCCTGAGTCTCGATCTTCTTGTTGTTGAACACGGGGCTTTCTTGAGCCTCCAGCACGTCGACTGTGTAAAGCTTCCGATGGCGGAAATATGACAAGACGAGCGAGCACCACGCCGCCAGCTGCTTCTGTCTTGTATCAACATTTGGCTGCAgtctgaaaaagaaaagatacAAACCATTAGActtctaaataaaacaaatggcaATTTAATCATTACAAATTactttaataatacaaatattgttaTATGGAATATCAAGCAGTGCAATATGACACTTGTTCTTTT

Function

symbol description
vps25 Predicted to enable protein homodimerization activity and structural molecule activity. Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within multivesicular body sorting pathway and protein transport. Predicted to be located in cytoplasm. Predicted to be part of ESCRT II complex. Orthologous to human VPS25 (vacuolar protein sorting 25 homolog).

NR:

description
vacuolar protein-sorting-associated protein 25

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50021 True 603 lncRNA 0.39 3 17792026 17793801

Neighbor

gene id symbol gene type direction distance location
g6pc3 NA coding upstream 257749 17521497 ~ 17534277 (+)
tmem101 tmem101,LOC107708986,LOC107693682 coding upstream 300962 17483919 ~ 17491064 (+)
LOC111188179 NA coding upstream 367832 17423685 ~ 17424194 (+)
LOC103022777 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding upstream 382092 17397153 ~ 17409934 (+)
dmc1 dmc1 coding upstream 395969 17391730 ~ 17396057 (+)
pagr1 pagr1,LOC107708911 coding downstream 3033 17796834 ~ 17802617 (+)
cabp5 cabp5a,LOC108425940,LOC107708978,LOC107562016,LOC107693687,LOC105909107 coding downstream 84794 17878595 ~ 17888249 (+)
nif3l1 nif3l1 coding downstream 102989 17896790 ~ 17903709 (+)
LOC103030008 NA coding downstream 123063 17916864 ~ 17924970 (+)
LOC103029386 NA coding downstream 235297 18029098 ~ 18039806 (+)
G37097 NA non-coding upstream 77935 17713885 ~ 17714091 (+)
G37096 NA non-coding upstream 78339 17713461 ~ 17713687 (+)
G37092 NA non-coding upstream 82190 17684712 ~ 17709836 (+)
G37089 NA non-coding upstream 93374 17693790 ~ 17698652 (+)
G37068 lsm12 non-coding upstream 274437 17509967 ~ 17517589 (+)
G37120 maz non-coding downstream 28610 17822411 ~ 17828668 (+)
G37137 NA non-coding downstream 98861 17892662 ~ 17892962 (+)
G37141 NA non-coding downstream 119021 17912822 ~ 17913085 (+)
G37151 eif3c non-coding downstream 148047 17941848 ~ 17949188 (+)
G37153 NA non-coding downstream 149857 17943658 ~ 17944500 (+)
G37099 NA other upstream 72650 17718231 ~ 17719376 (+)
G37098 NA other upstream 76034 17715129 ~ 17715992 (+)
LOC103045739 LOC103045739 other upstream 83429 17705679 ~ 17708597 (+)
tnrc6b tnrc6b other upstream 451134 17297479 ~ 17340892 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other upstream 509795 17250981 ~ 17282231 (+)
G37131 taok2,LOC108425925,LOC108273910 other downstream 64116 17857917 ~ 17863066 (+)
G37152 LOC108425993 other downstream 158779 17952580 ~ 17960304 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other downstream 168139 17961940 ~ 17970999 (+)
LOC103046566 NA other downstream 270182 18063983 ~ 18099979 (+)
G37404 NA other downstream 313763 18107564 ~ 18113926 (+)

Expression


Co-expression Network