G37151 (eif3c)


Basic Information

Item Value
gene id G37151
gene name eif3c
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17941848 ~ 17949188 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50068
ACTGTGACTGTTTCAGAAATTGAAtaactttattgttttaaatcagataaatcaCACAAAGAACAAACCTGCCAAGCTTCTACCTAAAATCCTGCTTCACACAGACCTGAACCTCACTGTAAAGAAGGGTGAACTGAGGGAAAGCAAATCTATTGAAACAGAAATACAGTCTGCAGGTCTGGATGAATAAGCTGTACAGTGTGATTAAACAGGCTGAGGTGGAGTGGAGAAGCAGAGGAGATGTTAGAACTTTATAGAGAtggaaagaagaagaagtcaAGCTCAGGAAGCGGCAGTCTGGTCTTGGAATGAAAGCGGGTCCTGCTTCTACCGGGCTGGGTTTTAGTAAGAGCCCTGGTTCTGGGACCTGTATCCTCCTCGCTGGTAGCCGCCCTGCCTCTGCTGGTAGGAGCCTTTCTGATCTCGTTGGTAACCTTGCCTCTGTTGGTAACCGCCCCTCTGGTCTGAATCTCTGTTGAAGTATCCTCCATAGACGCCCTGTTTGAGGTCAAAGACACGCTCATTGTTCTCCACTAGGCCGCCCAGCTTCTCAGCCAGCTGGAGCGCCATGTTCTGCAGGGAGGTGGGCTCTGTTCTGTGCATCACTACTGTCTGAGTGGGCTGGTCCAGAGACGCCATCAGCTCCTCGTTGATGATCATTTTACTGATAATGCTGTGTACTGTGGGCAACTCCAGCTGAAACATCTCTGATAAAGTCTCCATGCtgcagaaagaagaaagaaacaaGGGTGATAAAACACAGATGGCATAAAGACCAGACCATCATCAGTACACAGGCAGTG

Function

symbol description
eif3c Predicted to enable translation initiation factor binding activity. Predicted to contribute to translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Orthologous to several human genes including EIF3CL (eukaryotic translation initiation factor 3 subunit C like).

NR:

description
eukaryotic translation initiation factor 3 subunit C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50068 True 803 lncRNA 0.48 4 17941848 17949188

Neighbor

gene id symbol gene type direction distance location
LOC103030008 NA coding upstream 16878 17916864 ~ 17924970 (+)
nif3l1 nif3l1 coding upstream 38139 17896790 ~ 17903709 (+)
cabp5 cabp5a,LOC108425940,LOC107708978,LOC107562016,LOC107693687,LOC105909107 coding upstream 53599 17878595 ~ 17888249 (+)
pagr1 pagr1,LOC107708911 coding upstream 139231 17796834 ~ 17802617 (+)
g6pc3 NA coding upstream 407571 17521497 ~ 17534277 (+)
LOC103029386 NA coding downstream 79910 18029098 ~ 18039806 (+)
mapk7 NA coding downstream 179252 18128440 ~ 18138878 (+)
LOC103047175 LOC108441166,LOC108273636,LOC107557340 coding downstream 222166 18171354 ~ 18185983 (+)
LOC103030877 NA coding downstream 251163 18200351 ~ 18214204 (+)
LOC103032559 LOC108441169 coding downstream 383286 18332474 ~ 18343461 (+)
G37141 NA non-coding upstream 28763 17912822 ~ 17913085 (+)
G37137 NA non-coding upstream 48886 17892662 ~ 17892962 (+)
G37120 maz non-coding upstream 113180 17822411 ~ 17828668 (+)
G37108 vps25 non-coding upstream 148047 17792026 ~ 17793801 (+)
G37097 NA non-coding upstream 227757 17713885 ~ 17714091 (+)
G37391 aldoa,aldoab,LOC107720037,LOC107654538,LOC107581735,LOC107674678,LOC107660459 non-coding downstream 93780 18042968 ~ 18055855 (+)
G37394 NA non-coding downstream 102510 18051698 ~ 18053555 (+)
G37410 NA non-coding downstream 177912 18127100 ~ 18127560 (+)
G37411 NA non-coding downstream 192816 18142004 ~ 18142378 (+)
G37413 NA non-coding downstream 202180 18151368 ~ 18160034 (+)
G37131 taok2,LOC108425925,LOC108273910 other upstream 78782 17857917 ~ 17863066 (+)
G37099 NA other upstream 222472 17718231 ~ 17719376 (+)
G37098 NA other upstream 225856 17715129 ~ 17715992 (+)
LOC103045739 LOC103045739 other upstream 233251 17705679 ~ 17708597 (+)
tnrc6b tnrc6b other upstream 600956 17297479 ~ 17340892 (+)
G37152 LOC108425993 other downstream 3392 17952580 ~ 17960304 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other downstream 12752 17961940 ~ 17970999 (+)
LOC103046566 NA other downstream 114795 18063983 ~ 18099979 (+)
G37404 NA other downstream 158376 18107564 ~ 18113926 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other downstream 422190 18371378 ~ 18376345 (+)

Expression


Co-expression Network