G37185 (sun1)


Basic Information

Item Value
gene id G37185
gene name sun1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17000372 ~ 17015898 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50115
aaaaaaacaaaacagttgtGCATATAAATAACAGGCAGACTTGTGCTGACCCCAGAAGCTGTCAACGAGAGTGCGCTCCTGTATGCGCGACTCGTCAAGCAGGGACGACAGGAGTGAGGCATCGCTGGCAGTGCAGCTGCGCAGGCTGCTGTTGTGAGCCTGCAGCACAGAGGTAGACTGACTCTTTACTGGAGTCTGAAGCAGCGAGCCTGAACCGGCTGAGGAGCGATGAGACCTCCTGCTCTTTAAGGtcTTGCTCTcctgatgaacagaacctccaGAACTGTAGGAGATGCTGTGGTTGTGTGAAGAGTCCAGTAAGCTGTCATCACGGTAGTGAGTGCTGCCTGCGTGCAGCCGAAGGCTGCGGCGTGACATCCTGGGTGAGTCAAACACGGGAGCCAGTCGATGCTCCCTCTCGTAATCCAGCGCTGTTGTGGAGTAGCTGGAGCTTCGCTCCAGAAGTCTCCAGTTATGTTGAGAAAATGATTCGcgataaataaaacactttagaAGTTAAAACAATAAGGGACAGGTTGTCAGGAAGAAGTTCAGGCAGCATCAGGTGTTCACTTAGTTAAATTAAGGTGTACCGTTAGCGCTACCCATCTCTCCTGACGTGAGCGGATGTATTAACTACGTTACTTACAGGTGAC

Function

symbol description
sun1 Predicted to enable protein-membrane adaptor activity. Predicted to be involved in nuclear envelope organization. Predicted to be located in membrane. Predicted to be integral component of nuclear inner membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Predicted to be active in nuclear envelope. Orthologous to human SUN1 (Sad1 and UNC84 domain containing 1).

NR:

description
PREDICTED: SUN domain-containing protein 1 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50115 True 656 lncRNA 0.51 3 17000372 17015898

Neighbor

gene id symbol gene type direction distance location
LOC103037732 NA coding downstream 106855 16875022 ~ 16893517 (-)
exoc6 exoc6,LOC107654070 coding downstream 134278 16798517 ~ 16866094 (-)
LOC103044660 LOC103044660,LOC108412396,LOC107653962,LOC108273895,LOC107745679,LOC107593523,LOC107596578 coding downstream 206865 16790627 ~ 16793507 (-)
jmjd1c jmjd1c,jmjd1cb,LOC108412835 coding downstream 286883 16538181 ~ 16713489 (-)
egr2 egr2,egr2b,LOC107596611,LOC107596614,LOC107653961,LOC107739063,LOC107745678 coding downstream 516227 16463328 ~ 16484145 (-)
LOC103032763 snu13,nh2l1,snu13b,LOC105898651,LOC105031476,LOC105910236 coding upstream 49505 17065403 ~ 17067982 (-)
trnal-uag_1 NA coding upstream 79347 17095245 ~ 17095326 (-)
LOC103043322 NA coding upstream 132643 17148541 ~ 17169878 (-)
LOC103029821 aco2,LOC108273913,LOC107692062,LOC107554054,LOC107731401 coding upstream 171769 17187667 ~ 17198837 (-)
LOC103028774 NA coding upstream 188434 17204332 ~ 17212783 (-)
G36922 reep3 non-coding downstream 248204 16742832 ~ 16752168 (-)
G36882 NA non-coding downstream 355807 16638592 ~ 16644565 (-)
G36845 NA non-coding downstream 511780 16487035 ~ 16488592 (-)
G36836 NA non-coding downstream 594889 16405253 ~ 16405483 (-)
G36807 NA non-coding downstream 753601 16246540 ~ 16246771 (-)
G37189 NA non-coding upstream 4823 17020721 ~ 17020928 (-)
G37186 NA non-coding upstream 10559 17026457 ~ 17026942 (-)
G37191 sun1 non-coding upstream 20658 17036556 ~ 17040941 (-)
G37206 NA non-coding upstream 75844 17091742 ~ 17092051 (-)
G37213 NA non-coding upstream 92814 17108712 ~ 17110709 (-)
LOC103043629 LOC108412394 other downstream 85087 16913570 ~ 16915285 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 1159856 15837105 ~ 15840516 (-)
G36677 NA other downstream 1225779 15747400 ~ 15774593 (-)
c4h10orf88 LOC103041415 other downstream 2203160 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 3500195 13475166 ~ 13500177 (-)
G37183 NA other upstream 230 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 31709 17047607 ~ 17062947 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other upstream 163449 17179347 ~ 17184427 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other upstream 358286 17374184 ~ 17381733 (-)
G37290 NA other upstream 417074 17432972 ~ 17466024 (-)

Expression


Co-expression Network