G37254 (tnrc6b,LOC107690060)


Basic Information

Item Value
gene id G37254
gene name tnrc6b,LOC107690060
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17335591 ~ 17337322 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50220
ATTGTTGAGGGGGCTGTCTGAGGCACTGTAGGGCCAGGCACCAGGTGAAGGCAGCAAGGTGTTTAGGGAGGGGGTTGATTCTGTGTTATCTCGAAGCAACGGGTGCTCAGTATCATTGATGCTCGACACGGTCGATGAGCTCAGTATACCTCCAGGGGTCATGTAGGGGTCTGATTCTGGATCAACACTCGGAATTCCTTTCCAAGGCACCCCTGGCTGGAATTCTGGAGGCCATGTGGATGTGCCCGTTTTGTTTCCCATTTTGTTCCCAGGGGTTCTCTGCCAGCTGTCCGAAGGCACACCCAAACTATCCACCCCCAGCATCTCATACTGGGAGTATGGCGAGCTACCTCTCTTCACAGGAGCAGCAATGGGGcctTTTTGTGAATTGCGCTGTCTGGAGAGGAGGGAGCTGGTGAGTGACCTTCCATCATCCATTTAAACCGGGATTGCTGTCCCCCTCCTTCTTTTAAACCAGAAGAAGCACCAACCATTGAACCCAACTCAAGGCCAGAACCAAACCCTGATGGTTTcggaaacagaacagaacaggctAATTAGCAACAAAGAACTGACATTTGGTTGAGACAGACAGCAAAGGTTAATGTAAGCATACAGCAATATGGGAATTCTTGGTCTGCACTGGCCAGTGTCTGTTTTGCCTTGCaaatacacagacatgccacTGACATGATGAGTCAAGAGACAGGACTTTGTCTCCCATGAGTTTTGCCATGACCCAGAGAAGCTAAATACCACTGACCTGCAGAGCACGATTGTCAAAATGAATGTTGATGTGATGTGGATTTCTGCCAgatttgcttgtctgtttgcaaaGACAATTCAATCCAGACGCTGATaatcatgatcattaccacccactgtgctgtccactgtgcaTGGTAATGCATTCTATGGCACATTCCAGAAACAGGTGCATGGTGGAATGAGAAACGTTGAATGGCCACTAgagtttacatttacatttaaggtatttagcagacgccctttatccagagcgacttacaacagtgctttgtTGTTTAATTCAAAATATCTATAGCTAGTATGTAGATTaggataaaaaaacacaaaaaagcttGATGATGTTTAGAACCCAGTGGacacccagtggaagttcattccaccaacttggtttgttttctgttggtcTTGAGGGATGGTGACTCAaaccgagccgtactggaatcGTTTGGAAACTGGAAGAGTTtttggtacagatctggctttgaccattgccattAATTAGGAAGGAGCTGgtctgtttttggatttgtagggcagcgtcagggttttgaatttgatgcgggcggcaacaggaagccagtggaggaaGGAACGCAgaaaaggagtcacatgactgaacttcggaagattgaagatgAG

Function

symbol description
tnrc6b Predicted to enable nucleic acid binding activity. Predicted to be involved in gene silencing by miRNA and positive regulation of nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within miRNA mediated inhibition of translation. Predicted to be active in P-body and nucleoplasm. Human ortholog(s) of this gene implicated in subserous uterine fibroid and uterine fibroid. Orthologous to human TNRC6B (trinucleotide repeat containing adaptor 6B).

NR:

description
PREDICTED: trinucleotide repeat-containing gene 6B protein isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50220 True 1407 lncRNA 0.47 4 17335591 17337322

Neighbor

gene id symbol gene type direction distance location
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding downstream 9676 17319206 ~ 17325915 (-)
LOC103027309 NA coding downstream 46759 17273373 ~ 17288832 (-)
LOC103028243 LOC108431941,LOC107584177 coding downstream 103452 17213596 ~ 17232139 (-)
LOC103028774 NA coding downstream 122808 17204332 ~ 17212783 (-)
LOC103029821 aco2,LOC108273913,LOC107692062,LOC107554054,LOC107731401 coding downstream 136754 17187667 ~ 17198837 (-)
rsl1d1 NA coding upstream 77753 17415075 ~ 17421795 (-)
LOC111192420 NA coding upstream 93684 17431006 ~ 17438492 (-)
LOC111192380 NA coding upstream 105319 17442641 ~ 17466671 (-)
LOC103024821 LOC108425935 coding upstream 163147 17500469 ~ 17504817 (-)
lsm12 lsm12,LOC107708984,LOC107693683,LOC107562026 coding upstream 172638 17509960 ~ 17517710 (-)
G37237 tnrc6b non-coding downstream 7995 17241176 ~ 17327596 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding downstream 88138 17241720 ~ 17247453 (-)
G37217 NA non-coding downstream 213390 17121775 ~ 17122201 (-)
G37215 NA non-coding downstream 219583 17112502 ~ 17116008 (-)
G37213 NA non-coding downstream 224882 17108712 ~ 17110709 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding upstream 48519 17385841 ~ 17390421 (-)
G37298 tmem101,LOC107720276 non-coding upstream 151563 17488885 ~ 17494415 (-)
G37309 NA non-coding upstream 216250 17553572 ~ 17555922 (-)
G37333 LOC103045739 non-coding upstream 368412 17705734 ~ 17708605 (-)
G37443 NA non-coding upstream 789212 18126534 ~ 18126807 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 151164 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 272644 17047607 ~ 17062947 (-)
G37183 NA other downstream 316673 17016128 ~ 17018918 (-)
LOC103043629 LOC108412394 other downstream 420306 16913570 ~ 16915285 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 1495075 15837105 ~ 15840516 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other upstream 36862 17374184 ~ 17381733 (-)
G37290 NA other upstream 95650 17432972 ~ 17466024 (-)
LOC103025140 NA other upstream 136588 17473910 ~ 17476878 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 197381 17534703 ~ 17689384 (-)
cntd1 NA other upstream 355175 17692497 ~ 17705023 (-)

Expression


Co-expression Network