G37298 (tmem101,LOC107720276)


Basic Information

Item Value
gene id G37298
gene name tmem101,LOC107720276
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17488885 ~ 17494415 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50288
TACTGTCTTTTTAAGACTGACAATGAGCTGCATTTTGATTGGCTGCTCTGTATTAAGACTTAAGGCAGGTTTATAATTCTATAATGAGTCCCTTATTGGTCAGAATggggagaaagaaagtaaacagtgtaaagctgctttaccTCAGTGGGAAAACAGCTTAgtatggagcagcagagacagtgatTGTTAATAGCTGTTGTAATTATCTGGgcaataaatcagattaaactgcacctgtacagcagtttagctcaaacatgagGAGTTTAGTGGAGTTTGTTTGGAACCAGAACTAGACCACCTTCTCCCACAGGTGGTTTGGTCATTACCCATTGCAATTACGGGTTTCACAcctgcccacacacacagcatcaaTGATGCAAATGAACCAGAGTGGtttttaactggaccaaataggGGTGGTTTTAAAAAACACCCTTACTCAAAAAAACGCTTAGTACTGAAACACTCCTGAGAAATGCAGTATGATTAGATGGCCTAAACTGAGATTTGTAAAACTTTATATATTCcaataatttgatttttttttttatttttttttttatttagaggaAACATTAAATCCTTATGTTGTTACAGTATTTAATGTGATGCACATATTCAAATGTGCTGTTAAAATCACGTAAACGGGAGAATTGTtcagtttttaataatgtaaaaatgcacTCCTGACAAAAAACATTCTGAATCAATTTTTGTATAGCTTATTGGATTCTAATTTTCTAGTAAAGTACATAAAAGTGTTTTGAGATGTGTTGGTTTAAAACCTCAGACCCTATCAAacttatttattcactgttttgtCTTCTGGACCCTTGGTCTACCACAAACTTGCACTTTGCTCTTTAAGATCcgacaccagaaaaaaaaatccttatggCACTATTTAGTCTCCTGTCTGCACCTTAGACAACctctaaaaaccttttttttttaatcatgagcATTAAAGAAGTGTTAAATTGGTGCCTGAAATCTGTCGCTTCTGTTTTGTGTTAAAGACGCAACAGTAatagaacagacagacagactactaaaaactgtgtgaaactaaaacacaaacttTAGACATCAAACCTGTCTAATCAagatttgggaaaaaaaatagggAAAACCAtgtatttcagatttttcaatTAACTATTCCTTTAACCTTGGGCTCAGCATCATCCATCTGTTTGTACAAAGTAAGCCTCCTCTGTTCGGCTCCTCAACCATCCGTAGCTAAGATAAGCACCGCCCCGAAAATGCCCACGTTGTGCCCGATCAGTTTCATCTGGTTCCAGAACTCCACGCGGCGGGAGCGGTGCCAGTACCCGATGTTTCCGTCTATAAAGAGGATGACCAGCGGCAGGAGGACGGAGAGGATCTGAGAGGAAAGCTGCACGTAGCAGCCGGAGAGGTAGGACAGAGCCAGCACACCAAAGACCACCACCAGCAGCTGGACGGTGACCTCTCCTCCAGGGATGTGGTCCAGGTACGCCAATCTGTCCTCTTGGCTGTGCTGGAGG
>TU50290
TACTGTCTTTTTAAGACTGACAATGAGCTGCATTTTGATTGGCTGCTCTGTATTAAGACTTAAGGCAGGTTTATAATTCTATAATGAGTCCCTTATTGGTCAGAATggggagaaagaaagtaaagctgctttaccTCAGTGGGAAAACAGCTTAgtatggagcagcagagacagtgatTGTTAATAGCTGTTGTAATTATCTGGgcaataaatcagattaaactgcacctgtacagcagtttagctcaaacatgagGAGTTTATTTAATAGTGGAGTTTGTTTGGAACCAGAACTAGACCACCTTCTCCCACAGGTGGTTTGGTCATTACCCATTGCAATTACGGGTTTCACAcctgcccacacacacagcatcaaTGATGCAAATGAACCAGAGTGGtttttaactggaccaaataggGGTGGTTTTAAAAAACACCCTTACTCAAAAAAACGCTTAGTACTGAAACACTCCTGAGAAATGCAGTATGATTAGATGGCCTAAACTGAGATTTGTAAAACTTTATATATTCcaataatttgatttttttttttatttttttttttatttagaggaAACATTAAATCCTTATGTTGTTACAGTATTTAATGTGATGCACATATTCAAATGTGCTGTTAAAATCACGTAAACGGGAGAATTGTtcagtttttaataatgtaaaaatgcacTCCTGACAAAAAACATTCTGAATCAATTTTTGTATAGCTTATTGGATTCTAATTTTCTAGTAAAGTACATAAAAGTGTTTTGAGATGTGTTGGTTTAAAACCTCAGACCCTATCAAacttatttattcactgttttgtCTTCTGGACCCTTGGTCTACCACAAACTTGCACTTTGCTCTTTAAGATCcgacaccagaaaaaaaaatccttatggCACTATTTAGTCTCCTGTCTGCACCTTAGACAACctctaaaaaccttttttttttaatcatgagcATTAAAGAAGTGTTAAATTGGTGCCTGAAATCTGTCGCTTCTGTTTTGTGTTAAAGACGCAACAGTAatagaacagacagacagactactaaaaactgtgtgaaactaaaacacaaacttTAGACATCAAACCTGTCTAATCAagatttgggaaaaaaaatagggAAAACCAtgtatttcagatttttcCATCTGTTTGTACAAAGTAAGCCTCCTCTGTTCGGCTCCTCAACCATCCGTAGCTAAGATAAGCACCGCCCCGAAAATGCCCACGTTGTGCCCGATCAGTTTCATCTGGTTCCAGAACTCCACGCGGCGGGAGCGGTGCCAGTACCCGATGTTTCCGTCTATAAAGAGGATGACCAGCGGCAGGAGGACGGAGAGGATCTGAGAGGAAAGCTGCACGTAGCAGCCGGAGAGGTAGGACAGAGCCAGCACACCAAAGACCACCACCAGCAGCTGGACGGTGACCTCTCCTCCAGGGATGTGGTCCAGGTACGCCAATCTGTCCTCTTGGCTGTGCTGGAGG

Function

symbol description
tmem101 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM101 (transmembrane protein 101).

NR:

description
transmembrane protein 101 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50288 True 1535 lncRNA 0.40 2 17488885 17494415
TU50290 False 1496 lncRNA 0.40 3 17488885 17494415

Neighbor

gene id symbol gene type direction distance location
LOC111192380 NA coding downstream 22214 17442641 ~ 17466671 (-)
LOC111192420 NA coding downstream 50393 17431006 ~ 17438492 (-)
rsl1d1 NA coding downstream 67090 17415075 ~ 17421795 (-)
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding downstream 162970 17319206 ~ 17325915 (-)
LOC103027309 NA coding downstream 200053 17273373 ~ 17288832 (-)
LOC103024821 LOC108425935 coding upstream 6054 17500469 ~ 17504817 (-)
lsm12 lsm12,LOC107708984,LOC107693683,LOC107562026 coding upstream 15545 17509960 ~ 17517710 (-)
wnk4 NA coding upstream 216585 17711000 ~ 17784278 (-)
LOC103047174 fam57b,fam57bb,LOC108274141,LOC106583943,LOC107578766,LOC106579402 coding upstream 309319 17803734 ~ 17820280 (-)
maz maz coding upstream 328343 17822758 ~ 17836906 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding downstream 98464 17385841 ~ 17390421 (-)
G37254 tnrc6b,LOC107690060 non-coding downstream 151563 17335591 ~ 17337322 (-)
G37237 tnrc6b non-coding downstream 161289 17241176 ~ 17327596 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding downstream 241432 17241720 ~ 17247453 (-)
G37217 NA non-coding downstream 366684 17121775 ~ 17122201 (-)
G37309 NA non-coding upstream 59157 17553572 ~ 17555922 (-)
G37333 LOC103045739 non-coding upstream 211319 17705734 ~ 17708605 (-)
G37443 NA non-coding upstream 632119 18126534 ~ 18126807 (-)
G37444 NA non-coding upstream 632839 18127254 ~ 18127560 (-)
G37449 NA non-coding upstream 643534 18137949 ~ 18139122 (-)
LOC103025140 NA other downstream 12007 17473910 ~ 17476878 (-)
G37290 NA other downstream 22861 17432972 ~ 17466024 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other downstream 107152 17374184 ~ 17381733 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 304458 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 425938 17047607 ~ 17062947 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 40288 17534703 ~ 17689384 (-)
cntd1 NA other upstream 198082 17692497 ~ 17705023 (-)
vps25 vps25 other upstream 295536 17789951 ~ 17795988 (-)
LOC103047479 LOC108441156 other upstream 788075 18282490 ~ 18317957 (-)
G37603 NA other upstream 1078276 18572691 ~ 18573176 (-)

Expression


Co-expression Network