LOC111192384


Basic Information

Item Value
gene id LOC111192384
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18232596 ~ 18253772 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50540
atttaattcagctGTGTGATTCACTCTCTCTGAGACACATGGTTCTCTCCTTAGAATATAGAGCAGCTTTTGTATTTAGATAGTGCCATATAATCCcgtttatatctttatatttatcaGCATTCTGCTTGTTTAACCCGCAGTACATTTATTAAAGTACTGTAGTGCACTCTGTAGGGAGCATGGAGCTATTTGAGACGAGGCCCTGTTAGTAAACTAAGGGCTAAGAGTGGATTACACAAGGAGCGCAGGTTTAGAGCTGCCGTTGCCCCAGTGGAGGTGGAACTGTTGGGTCCTGTAGAGGCCTGGAAGACCCCCTCCAGAAACACTCATCTTCCTGTCATCCAGGAGAACTTTcactgcagtggaaaagcattTTACTCACCTCTAACTGAGTAGAGCAGGTCTCACTAGACTTACCAAGTCTTGGCTGACTTTGATGGGCTCTTTGAAGACGGTCCACACCACAGCTTCATTGCAGGAGGGCGTGGTCAGGGAGCCGAGGTAGCGATAATATTTAGTCCTGTCCACCCCTTGAAGAAGACTGTCCATAGTGAACTGGTACATGATGTCCACCGTGTCACCTAAAAACAAACCACAGGGTTGTTTTAACTCTCATTCATTATAATCCATGGTATAATTGCTGAAGTTTGGGCAGATTTAGAATTCAGTAATCATCACAAAACTCCACGAGATCAAAAACATATTCAGACTAtagcatattgtcgctgtccaatgaaaaacacttatctcaaacaacaactttacaggagagataaAAAACTTCTTAAcctgtaaaaagagtttatttcaggtcattctgaagagtttctattggtccattcatcaggaaatttgggcacagtgtaagggataATTTGtcagttcaaattatgtagtaaactaaaaatcgacaaaaatgaagataagtgtttttcactggacagcgacgatattaaCTACGCGTGTGAAAATGGCATAAAAGTAGGTTGTTACCAGTTTATAGTTGTTTTATCATTTAACTTTGGGGTACAGTATCCCGCATAAATTGACCTTTATCTTGTATTAAATTGCAGTGCTTATATACAGTTCTAGAAAAGAATAAGAgcgcacttaaaaataatgagtttctttgattttaccaaattgaaaacctctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaaactgaactgcttaaatttgtgcaccagaagtgaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaaaatgcatgaaaagtgtgattaaaatccag
>TU50541
agaTACATTGCACATAAAAAGCACATTCTCCCTGTGTTTGAATTCATCATCTGAACCTTCATTACAAAAATAACCTTCAGTGGCTTCATTATCTCTTCATACAACATGATGATCATTTACAAGTATTGGTCCAGTTAGTGGATCCTCTATTTGGTCGGAAGACGTAGGTCTAGACTAGACACTCATTCCTCAATAGAAGCAAAATTCTGTCCAATCACTGCACACTACAACCAGCTCAGTAGAGAGTAGAGCAGCAGTGCagcggtggtggtggtgctgatgGACAGGGTGTGGTAGGGTGTGGTTGCTGATGAACGCTGGGTTGTTATCACTCTGGTGTTCAGGGGCTGGACTCCCCTGTAGGTGTTGGTCATCAGTGGGTGGTTTGTTGTATTAATGTACACGGTGGTGCTGAAGAGGTTGATCAAGTCTTGGCTGACTTTGATGGGCTCTTTGAAGACGGTCCACACCACAGCTTCATTGCAGGAGGGCGTGGTCAGGGAGCCGAGGTAGCGATAATATTTAGTCCTGTCCACCCCTTGAAGAAGACTGTCCATAGTGAACTGGTACATGATGTCCACCGTGTCACCTTTGTTAGGAATGCTCGACAGGTAGGACGTCAGGTTCTTCCAGCTCTCTGGATAACCAGTGTCATTGGTTGCTTCAATGAAGAAACCAAGAACAGCCAATCCTGTTGAGTCCCCGAGAGCGACACTTATGTTTGGGTGGGTGGACTTCATGTTAACTATGTgcagctccATGGGATATTGTTTGCCATTCACAGTGTGCTCTGATCCAGGTGCAGAGCTGCCGTTGCCCCAGTGAAGGTGCATCTGCTGGGTCTTGTATACGCCTGGAAGACCCCCTCCAGACACACTCATCTTACTGTCGTCCAGACCTACCTTCACTGATTTTCCGTCTGCGTTTTGAATCTGCAGGACTGTGGAATTATCATCAAACCCAGTGAAGTTGAAGGCAGTCAGGCTGGCGTCCTCCTTTACATCAGTGGTCACAATATTAACAGGAGACTGCTGGGTGCCGTTACAGTGTTCCACCACTGTGTGTGACCATGTGGTGTAATTGCAGGTGTGCAGATGGTAGCACCAATCTGCTGAAGAGCCTTCACTCATAACAGTGGGAAGCAGACAGACTGCAAGAAGTGTGAAGAACTGGGctttcatCTTTAAGCTGTGATGTTCTCAG
>XR_002649890.1
TGAGACACATGGTTCTCTCCTTAGAATATAGAGCAGCTTTTGTATTTAGATAGTGCCATATAATCCcgtttatatctttatatttatcaGCATTCTGCTTGTTTAACCCGCAGTACATTTATTAAAGTACTGTAGTGCACTCTGTAGGGAGCATGGAGCTATTTGAGACGAGGCCCTGTTAGTAAACTAAGGGCTAAGAGTGGATTACACAAGGAGCGCAGGTTTAGAGCTGCCGTTGCCCCAGTGGAGGTGGAACTGTTGGGTCCTGTAGAGGCCTGGAAGACCCCCTCCAGAAACACTCATCTTCCTGTCATCCAGGAGAACTTTcactgcagtggaaaagcattTTACTCACCTCTAACTGAGTAGAGCAGGTCTCACTAGACTTACCAAGTCTTGGCTGACTTTGATGGGCTCTTTGAAGACGGTCCACACCACAGCTTCATTGCAGGAGGGCGTGGTCAGGGAGCCGAGGTAGCGATAATATTTAGTCCTGTCCACCCCTTGAAGAAGACTGTCCATAGTGAACTGGTACATGATGTCCACCGTGTCACCTAAAAACAAACCAC

Function

GO:

id name namespace
GO:0006885 regulation of pH biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50540 True 1327 lncRNA 0.39 3 18232596 18246900
TU50541 False 1203 lncRNA 0.48 9 18243121 18253772
XR_002649890.1 False 569 lncRNA 0.46 3 18232626 18246172

Neighbor

gene id symbol gene type direction distance location
LOC103030877 NA coding upstream 18392 18200351 ~ 18214204 (+)
LOC103047175 LOC108441166,LOC108273636,LOC107557340 coding upstream 46613 18171354 ~ 18185983 (+)
mapk7 NA coding upstream 93718 18128440 ~ 18138878 (+)
LOC103029386 NA coding upstream 192790 18029098 ~ 18039806 (+)
LOC103030008 NA coding upstream 307626 17916864 ~ 17924970 (+)
LOC103032559 LOC108441169 coding downstream 78702 18332474 ~ 18343461 (+)
LOC103034039 LOC108441161 coding downstream 166421 18420193 ~ 18449203 (+)
LOC103021514 NA coding downstream 265136 18518908 ~ 18529955 (+)
LOC103021833 scn4a,scn4aa,LOC108435052,LOC107732174,LOC107654028,LOC107598592,LOC107664628,LOC107708946 coding downstream 279762 18533534 ~ 18583781 (+)
cd79b NA coding downstream 338133 18591905 ~ 18598830 (+)
G37424 NA non-coding upstream 15313 18192610 ~ 18217283 (+)
G37413 NA non-coding upstream 72562 18151368 ~ 18160034 (+)
G37411 NA non-coding upstream 90218 18142004 ~ 18142378 (+)
G37410 NA non-coding upstream 105036 18127100 ~ 18127560 (+)
G37391 aldoa,aldoab,LOC107720037,LOC107654538,LOC107581735,LOC107674678,LOC107660459 non-coding upstream 176741 18042968 ~ 18055855 (+)
G37492 LOC108441156,LOC108274106 non-coding downstream 33131 18286903 ~ 18289386 (+)
G37501 LOC108441156 non-coding downstream 59534 18313306 ~ 18317952 (+)
G37534 NA non-coding downstream 132642 18386414 ~ 18386652 (+)
G37557 NA non-coding downstream 216387 18470159 ~ 18472573 (+)
G37592 NA non-coding downstream 335450 18589222 ~ 18641095 (+)
G37404 NA other upstream 118670 18107564 ~ 18113926 (+)
LOC103046566 NA other upstream 132617 18063983 ~ 18099979 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other upstream 261597 17961940 ~ 17970999 (+)
G37152 LOC108425993 other upstream 272292 17952580 ~ 17960304 (+)
G37131 taok2,LOC108425925,LOC108273910 other upstream 369530 17857917 ~ 17863066 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other downstream 117606 18371378 ~ 18376345 (+)
LOC103022762 NA other downstream 391863 18645635 ~ 18707728 (+)
G37749 NA other downstream 1075596 19329368 ~ 19331661 (+)
G37812 mms19,LOC106578995 other downstream 1227284 19481056 ~ 19484915 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other downstream 1235127 19488899 ~ 19511441 (+)

Expression


Co-expression Network