G37492 (LOC108441156,LOC108274106)


Basic Information

Item Value
gene id G37492
gene name LOC108441156,LOC108274106
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18286903 ~ 18289386 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50559
CTTTGCGTGTGGGAGGAGGCTTAGCTGCCTTCAGTACCCCACTCTGACACATAGCATCAGCCATCCACAGCAGAGTAGCAGAACAGAACtccatCTCTGACTCCAGCACTCGTAATCTACGATCAACATCCTTAATCTCAGCCGTCTGTTTCAGAACCCCGTCCACCTTGACAGACATGCGCTTCAGCCTCTCAGCTTCACTCTCTCTTTGCTTCTTGCCCTCAGCAGACAGGAGGTTCTCCTTCTGAATGTTCTCCCAGGTCATCATCCTGTTGTTGGCCTTATCAATTAGGTCTACAGCAAACTGGTGGATCTTCTCTGAGGGCACCTTGCGGATAT

Function

NR:

description
PREDICTED: transient receptor potential cation channel subfamily M member 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50559 True 339 lncRNA 0.51 4 18286903 18289386

Neighbor

gene id symbol gene type direction distance location
LOC103030877 NA coding upstream 72699 18200351 ~ 18214204 (+)
LOC103047175 LOC108441166,LOC108273636,LOC107557340 coding upstream 100920 18171354 ~ 18185983 (+)
mapk7 NA coding upstream 148025 18128440 ~ 18138878 (+)
LOC103029386 NA coding upstream 247097 18029098 ~ 18039806 (+)
LOC103030008 NA coding upstream 361933 17916864 ~ 17924970 (+)
LOC103032559 LOC108441169 coding downstream 43088 18332474 ~ 18343461 (+)
LOC103034039 LOC108441161 coding downstream 130807 18420193 ~ 18449203 (+)
LOC103021514 NA coding downstream 229522 18518908 ~ 18529955 (+)
LOC103021833 scn4a,scn4aa,LOC108435052,LOC107732174,LOC107654028,LOC107598592,LOC107664628,LOC107708946 coding downstream 244148 18533534 ~ 18583781 (+)
cd79b NA coding downstream 302519 18591905 ~ 18598830 (+)
LOC111192384 NA non-coding upstream 33131 18232596 ~ 18253772 (+)
G37424 NA non-coding upstream 69620 18192610 ~ 18217283 (+)
G37413 NA non-coding upstream 126869 18151368 ~ 18160034 (+)
G37411 NA non-coding upstream 144525 18142004 ~ 18142378 (+)
G37410 NA non-coding upstream 159343 18127100 ~ 18127560 (+)
G37501 LOC108441156 non-coding downstream 23920 18313306 ~ 18317952 (+)
G37534 NA non-coding downstream 97028 18386414 ~ 18386652 (+)
G37557 NA non-coding downstream 180773 18470159 ~ 18472573 (+)
G37592 NA non-coding downstream 299836 18589222 ~ 18641095 (+)
G37652 NA non-coding downstream 523353 18812739 ~ 18812951 (+)
G37404 NA other upstream 172977 18107564 ~ 18113926 (+)
LOC103046566 NA other upstream 186924 18063983 ~ 18099979 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other upstream 315904 17961940 ~ 17970999 (+)
G37152 LOC108425993 other upstream 326599 17952580 ~ 17960304 (+)
G37131 taok2,LOC108425925,LOC108273910 other upstream 423837 17857917 ~ 17863066 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other downstream 81992 18371378 ~ 18376345 (+)
LOC103022762 NA other downstream 356249 18645635 ~ 18707728 (+)
G37749 NA other downstream 1039982 19329368 ~ 19331661 (+)
G37812 mms19,LOC106578995 other downstream 1191670 19481056 ~ 19484915 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other downstream 1199513 19488899 ~ 19511441 (+)

Expression


Co-expression Network