G37596 (LOC108435052)


Basic Information

Item Value
gene id G37596
gene name LOC108435052
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18547625 ~ 18547908 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50689
TAGAAGGGGTCTATGTCCTCCAGAGGTGTGTTGAGCAGCTCATCGGGGGGATCTCCATAGATCATGGGCAGGGTCTTCCCGGCCTCCAGGTCGCTGCTCGGTGCTGTCGGCTCTGGCTCCACTCCCTCTACTTCATGCTCTTTTTGCTCCTGGATGAGCCTCTCGATTTTGGCCAGTGACTCCGGGGTGAAGCGGCGGAACGCTTCTCTGCCTGTGGGAGGGACCAGGTTTGCCATCTTCGCATCGCGAAGAAAGACCTCCTCACCGGGGAATCTCTACCTTCA

Function

NR:

description
PREDICTED: sodium channel protein type 4 subunit alpha A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50689 True 284 lncRNA 0.58 1 18547625 18547908

Neighbor

gene id symbol gene type direction distance location
LOC103034677 NA coding downstream 35540 18503640 ~ 18512085 (-)
LOC103047794 mapt,LOC108274153,LOC108441162 coding downstream 49269 18452946 ~ 18498356 (-)
LOC111192385 NA coding downstream 70504 18474987 ~ 18477121 (-)
LOC103033508 si:ch211-255p10.4,brsk1,LOC108441159,LOC107598587,LOC108247084,LOC103033508,LOC107557374,LOC108274928,LOC107654020,LOC107658484 coding downstream 137707 18388678 ~ 18409918 (-)
LOC103033182 LOC108441158,LOC108273897,LOC107664611,LOC107708947 coding downstream 163220 18360572 ~ 18384405 (-)
LOC107197613 LOC108429207,LOC108429768 coding upstream 514949 19062857 ~ 19124736 (-)
LOC103043551 LOC108444285,LOC108273949 coding upstream 732078 19279986 ~ 19291010 (-)
LOC111192386 rac3b,rac3,LOC100712409,LOC107571767,LOC108444292,LOC106535622,LOC106610298 coding upstream 782759 19330667 ~ 19340948 (-)
lrrc45 lrrc45 coding upstream 794121 19342029 ~ 19353789 (-)
LOC103038385 prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040 coding upstream 874992 19422900 ~ 19436284 (-)
LOC103035005 NA non-coding downstream 12854 18532616 ~ 18534771 (-)
G37565 NA non-coding downstream 98428 18410521 ~ 18449197 (-)
LOC103033820 NA non-coding downstream 129331 18411347 ~ 18418294 (-)
G37459 NA non-coding downstream 358181 18188473 ~ 18189444 (-)
G37458 NA non-coding downstream 359617 18187049 ~ 18188008 (-)
G37597 scn4a non-coding upstream 175 18548083 ~ 18550231 (-)
G37598 scn4a,LOC108435052 non-coding upstream 6441 18554349 ~ 18554604 (-)
G37600 scn4aa,scn4a,LOC107598592,LOC107732174 non-coding upstream 15203 18563111 ~ 18563493 (-)
G37601 NA non-coding upstream 16833 18564741 ~ 18565071 (-)
G37602 LOC108244585,LOC108235708,LOC107390838 non-coding upstream 17756 18565664 ~ 18566018 (-)
LOC103047479 LOC108441156 other downstream 229668 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 751637 17789951 ~ 17795988 (-)
cntd1 NA other downstream 842602 17692497 ~ 17705023 (-)
LOC103025753 LOC108425979,LOC108274047 other downstream 858241 17534703 ~ 17689384 (-)
LOC103025140 NA other downstream 1070747 17473910 ~ 17476878 (-)
G37603 NA other upstream 24783 18572691 ~ 18573176 (-)
G37616 NA other upstream 85670 18633578 ~ 18635098 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 996317 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 1270360 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 1963763 20511671 ~ 20679431 (-)

Expression


Co-expression Network