G37612 (plekhm1)


Basic Information

Item Value
gene id G37612
gene name plekhm1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18615222 ~ 18620375 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50708
CCTGTGAGTAACGCTCTTCAGCAGGCTCCAGAACACGGGTTGAGGCAGGGCTGGGCCCTTGCGGCCGCGGGCCCCGGCTCCGTCCGTGCGGATGTGTTTGCTCCGCAGGCCGTGGATGAAAACTGCTTCCAGAGCACAGCAGAGCTGATTGGCCTCCAAATCCTCGCTGGTCACCGCGGCGTCTGTAGTCACATAGCGCTTCTGCAGGGCCTTCAGCGTCTGCGCTATCTTCTCCTTAATCCACTGCTTGGCATTCTTGGCCTCTGGGACAGAGTCAGCGGTCTGTGTGGCGAGCATGACTCCTGTTCAGATCACATCACTTCATCATGTCTGTCACGGACTAAATGAAGTTTATTCAGAAAGAACAGGGGGAAATGTGTTTTAGATTAAATCCAGCAGCTTCCAGTCTCCCTAACCGAGCTTAAAAACAAGCAGATGAGCGGCAGATGAACTCAGACAGACAGCAGGAACAGCAGCAGTACTGGGTCGGCCTGCTCTCGCTGTAATTTACACACTGTACTGAAGATCCTCTGGCCGCCGCTCGACTGTGGTGGCAG

Function

symbol description
plekhm1 Predicted to act upstream of or within autophagy. Predicted to be located in endosome and lysosome. Human ortholog(s) of this gene implicated in autosomal recessive osteopetrosis 6 and osteopetrosis. Orthologous to human PLEKHM1 (pleckstrin homology and RUN domain containing M1).

NR:

description
PREDICTED: pleckstrin homology domain-containing family M member 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50708 True 557 lncRNA 0.55 3 18615222 18620375

Neighbor

gene id symbol gene type direction distance location
LOC103034677 NA coding downstream 103137 18503640 ~ 18512085 (-)
LOC103047794 mapt,LOC108274153,LOC108441162 coding downstream 116866 18452946 ~ 18498356 (-)
LOC111192385 NA coding downstream 138101 18474987 ~ 18477121 (-)
LOC103033508 si:ch211-255p10.4,brsk1,LOC108441159,LOC107598587,LOC108247084,LOC103033508,LOC107557374,LOC108274928,LOC107654020,LOC107658484 coding downstream 205304 18388678 ~ 18409918 (-)
LOC103033182 LOC108441158,LOC108273897,LOC107664611,LOC107708947 coding downstream 230817 18360572 ~ 18384405 (-)
LOC107197613 LOC108429207,LOC108429768 coding upstream 442482 19062857 ~ 19124736 (-)
LOC103043551 LOC108444285,LOC108273949 coding upstream 659611 19279986 ~ 19291010 (-)
LOC111192386 rac3b,rac3,LOC100712409,LOC107571767,LOC108444292,LOC106535622,LOC106610298 coding upstream 710292 19330667 ~ 19340948 (-)
lrrc45 lrrc45 coding upstream 721654 19342029 ~ 19353789 (-)
LOC103038385 prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040 coding upstream 802525 19422900 ~ 19436284 (-)
G37609 NA non-coding downstream 9573 18598257 ~ 18605649 (-)
G37606 scn4a,LOC108435052,LOC107654028 non-coding downstream 27744 18581426 ~ 18587478 (-)
G37605 scn4a,LOC107664628,LOC107708946,LOC107654028,LOC107732174,LOC108435052 non-coding downstream 33906 18580885 ~ 18581316 (-)
G37604 scn4aa,LOC105894041,LOC107654028,LOC107732174,LOC107598592,LOC108435052 non-coding downstream 36510 18578434 ~ 18578712 (-)
G37602 LOC108244585,LOC108235708,LOC107390838 non-coding downstream 49204 18565664 ~ 18566018 (-)
G37645 NA non-coding upstream 89078 18709453 ~ 18774343 (-)
G37643 LOC103035226,LOC108274320,LOC108431395,LOC104923118,LOC102233132 non-coding upstream 91236 18711611 ~ 18713444 (-)
G37667 LOC103035736,LOC108431365,LOC105007721,LOC103369715 non-coding upstream 194446 18814821 ~ 18824187 (-)
G37669 LOC108431393,LOC103369716 non-coding upstream 217393 18837768 ~ 18846662 (-)
G37671 NA non-coding upstream 239664 18860039 ~ 18862511 (-)
G37603 NA other downstream 42046 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 297265 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 819234 17789951 ~ 17795988 (-)
cntd1 NA other downstream 910199 17692497 ~ 17705023 (-)
LOC103025753 LOC108425979,LOC108274047 other downstream 925838 17534703 ~ 17689384 (-)
G37616 NA other upstream 13203 18633578 ~ 18635098 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 923850 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 1197893 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 1891296 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 3252945 21873320 ~ 21878377 (-)

Expression


Co-expression Network