G37771 (col1a3,LOC108444293,LOC106610502,LOC106589632)


Basic Information

Item Value
gene id G37771
gene name col1a3,LOC108444293,LOC106610502,LOC106589632
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19275151 ~ 19352477 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50945
ATCGTTTAATTTAACGGTGGGGGTCGAGAAGATAACATGCCGAACATTCAGGTGACCACTTAAAACATGCTTTATTTCAGCatccaaaataattaaaaacatcttgAAATATTATACATGTACAAAATAAGTACAGATCCTCTGGTTGAAACCATTAAAGTGTCTCGTTTGTGggtttttggtctttttttctcatgtgccgcctcatttcattttttttttcttagaaaataaagaaaacaaaaaaaacaaaaaataaaaataaaagcaaaaatgaaAGGAGGTGTGCATTGCAGTTTTGCAGTATGAGTGTGTGGAGGGAATGAACAGTTGGGGGCAGGGGGCGGGGCAAAGCCTTGGATAAGAAAATGGCAAACTGTCCACGTACTTAACTCACGTCAGATTAAGTGCAAATCTTAAGCAACCGTCACATTCAGCTTTTTATTCCCCTCAGCTGACACTTTAATGGGAAAAAGGAATCACATTGACAACAAGACATCGAGTTGACAGTTAGCACCAAACAGGAAATTAGCACCTTTTTTCTGACTGTTACTTGTGTTCTAGCTAGCCAGCTATAGCAAGCACTTGTTTTCACTTGTtttgctagttagctagttagctagtatGTGTGGCGTGGAAGGAGTCCCCCGAAAAACCCCACAACAGGTATTTTGGGTGATTTTTTGGGTTGTTCTGAGGTAGCCATTACAAGTTTTTCCTTTGGTTTTATGTCACACAATGCTTTCCCTTTCTTGGCTAGAAGAACAAGACAATTGACGGtcatttttcagatttattcAACACCAGAGAATGGTACATTAGCACGTAGCgtagttgtttttttcattgtccTTCTGCAGtggtaaaaaaaaggcaaaaaaattcACCAGTATTTTCATTACCGTTTGGGTTCTTCTCAGTTTTTTTGAGAAGGTGGGGGGGATGTGTGTGATTTTACACCTTACAAGCAcagttatatattattttcttgtTGCCAGGTGACCCAAAAATCATTCTCCCTAAGTGTCCGTGATGTTGACGCTGGATGGCATAGTGGTcctcaaaaaacattttcaaaaaaagagaaaaaagcagaATGTCTCTCAAGATCACGAAACGAGCACAATCCTCACAGACGCGAGTGTAAGCAGTGGACCGACTGCAGCCGAATGACAGTTGTTTGGGGGGGTTTAATGCATAGAAAAAGACTCGGAGATGACCattagaaataaaacaacattttttttaatgtccagatttttgtttttacaagaAGCAGACTGCGCCAACTTCTACACCGAATTCCTGATCGGGAGCACCAATGTCCATAGGAGCGATGTCAATGATGGGGAGGCGAGTTGTTTTCGCTGTCTGATACTCGATGACTGTCTTGCCCCATGTGccagtgtgtgaCGTGCAGCCATCCTCGCTGACTGTGTAGGTGGAGCGGCTGTTGCCCTCGGCCCTGATCTCCACATCGTTGGATCCCTGCAGGAGCAGAGCCTTCTTCAGGTTGCCAGAGGCCTGGTCCATGTAGGCGATGCTGTTCTTGCAGTGGTAGGTGATGTTCTGGGACGCCTTGTTGGACATCAGGCGCATGAAGGTCATCTGGATGTTCACATCCTCAGGATCAGAGCCCTCGCTGCCATACTGGAACtgt
>TU50947
tttagagtagtgagaggtgaaatgagttttgaagGAGCCATGATGCTTctcactgcccgcccacactataatctgattggctgactcacagacctTTTTCTCAGAACAGGCCAATTAGAACCCGAGGGGTGctgctttctctccctctccctctctttctcacacgtGATTGGGGGAAAAAAGTCTGTCGAGTTACAAACTGTGTAACTTACTAGTCAGAGTCAGTGTGTCATAGCGAGAAGTTGTAAGGAGGAGTTTTTCACATGTCTTGCTCTCTAGATAAGGCACAGTacagggcagccaatcagagcaaagCAAATTTACATAGATCAGTCTTGAAAGTCACAATGTGTTTAATTGTAAAAGATGGGCAGGGGATGAAGGATATCCTAATGGACATAATTCTGTATCTCATCACTTGTTTGTctagttagctagtatGTGTGGCGTGGAAGGAGTCCCCCGAAAAACCCCACAACAGGTATTTTGGGTGATTTTTTGGGTTGTTCTGAGGTAGCCATTACAAGTTTTTCCTTTGGTTTTATGTCACACAATGCTTTCCCTTTCTTGGCTAGAAGAACAAGACAATTGACGGtcatttttcagatttattcAACACCAGAGAATGGTACATTAGCACGTAGCgtagttgtttttttcattgtccTTCTGCAGtggtaaaaaaaaggcaaaaaaattcACCAGTATTTTCATTACCGTTTGGGTTCTTCTCAGTTTTTTTGAGAAGGTGGGGGGGATGTGTGTGATTTTACACCTTACAAGCAcagttatatattattttcttgtTGCCAGGTGACCCAAAAATCATTCTCCCTAAGTGTCCGTGATGTTGACGCTGGATGGCATAGTGGTcctcaaaaaacattttcaaaaaaagagaaaaaagcagaATGTCTCTCAAGATCACGAAACGAGCACAATCCTCACAGACGCGAGTGTAAGCAGTGGACCGACTGCAGCCGAATGACAGTTGTTTGGGGGGGTTTAATGCATAGAAAAAGACTCGGAGATGACCattagaaataaaacaacattttttttaatgtccagatttttgtttttacaagaAGCAGACTGCGCCAACTTCTACACCGAATTCCTGATCGGGAGCACCAATGTCCATAGGAGCGATGTCAATGATGGGGAGGCGAGTTGTTTTCGCTGTCTGATACTCGATGACTGTCTTGCCCCATGTGccagtgtgtgaCGTGCAGCCATCCTCGCTGACTGTGTAGGTGGAGCGGCTGTTGCCCTCGGCCCTGATCTCCACATCGTTGGATCCCTGCAGGAGCAGAGCCTTCTTCAGGTTGCCAGAGGCCTGGTCCATGTAGGCGATGCTGTTCTTGCAGTGGTAGGTGATGTTCTGGGACGCCTTGTTGGACATCAGGCGCATGAAGGTCATCTGGATGTTCACATCCTCAGGATCAGAGCCCTCGCTGCCATACTGGAACtgt
>TU50948
tttttttgttttttttGACCACTTAAAACATGCTTTATTTCAGCatccaaaataattaaaaacatcttgAAATATTATACATGTACAAAATAAGTACAGATCCTCTGGTTGAAACCATTAAAGTGTCTCGTTTGTGggtttttggtctttttttctcatgtgccgcctcatttcattttttttttcttagaaaataaagaaaacaaaaaaaacaaaaaataaaaataaaagcaaaaatgaaAGGAGGTGTGCATTGCAGTTTTGCAGTATGAGTGTGTGGAGGGAATGAACAGTTGGGGGCAGGGGGCGGGGCAAAGCCTTGGATAAGAAAATGGCAAACTGTCCACGTACTTAACTCACGTCAGATTAAGTGCAAATCTTAAGCAACCGTCACATTCAGCTTTTTATTCCCCTCAGCTGACACTTTAATGGGAAAAAGGAATCACATTGACAACAAGACATCGAGTTGACAGTTAGCACCAAACAGGAAATTAGCACCTTTTTTCTGACTGTTACTTGTGTTCTAGCTAGCCAGCTATAGCAAGCACTTGTTTTCACTTGTtttgctagttagctagttagctagtatGTGTGGCGTGGAAGGAGTCCCCCGAAAAACCCCACAACAGGTATTTTGGGTGATTTTTTGGGTTGTTCTGAGGTAGCCATTACAAGTTTTTCCTTTGGTTTTATGTCACACAATGCTTTCCCTTTCTTGGCTAGAAGAACAAGACAATTGACGGtcatttttcagatttattcAACACCAGAGAATGGTACATTAGCACGTAGCgtagttgtttttttcattgtccTTCTGCAGtggtaaaaaaaaggcaaaaaaattcACCAGTATTTTCATTACCGTTTGGGTTCTTCTCAGTTTTTTTGAGAAGGTGGGGGGGATGTGTGTGATTTTACACCTTACAAGCAcagttatatattattttcttgtTGCCAGGTGACCCAAAAATCATTCTCCCTAAGTGTCCGTGATGTTGACGCTGGATGGCATAGTGGTcctcaaaaaacattttcaaaaaaagagaaaaaagcagaATGTCTCTCAAGATCACGAAACGAGCACAATCCTCACAGACGCGAGTGTAAGCAGTGGACCGACTGCAGCCGAATGACAGTTGTTTGGGGGGGTTTAATGCATAGAAAAAGACTCGGAGATGACCattagaaataaaacaacattttttttaatgtccagatttttgtttttacaagaAGCAGACTGCGCCAACTTCTACACCGAATTCCTGATCGGGAGCACCAATGTCCATAGGAGCGATGTCAATGATGGGGAGGCGAGTTGTTTTCGCTGTCTGATACTCGATGACTGTCTTGCCCCATGTGccagtgtgtgaCGTGCAGCCATCCTCGCTGACTGTGTAGGTGGAGCGGCTGTTGCCCTCGGCCCTGATCTCCACATCGTTGGATCCCTGCAGGAGCAGAGCCTTCTTCAGGTTGCCAGAGGCCTGGTCCATGTAGGCGATGCTGTTCTTGCAGTGGTAGGTGATGTTCTGGGACGCCTTGTTGGACATCAGGCGCATGAAGGTCATCTGGATGTTCACATCCTCAGGATCAGAGCCCTCGCTGCCATACTGGAACtgt

Function

NR:

description
PREDICTED: collagen alpha-1(I) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50945 True 1660 lncRNA 0.42 3 19275151 19277669
TU50947 False 1475 lncRNA 0.45 3 19275151 19280839
TU50948 False 1623 lncRNA 0.42 4 19275151 19352477

Neighbor

gene id symbol gene type direction distance location
LOC107197613 LOC108429207,LOC108429768 coding downstream 150415 19062857 ~ 19124736 (-)
LOC103034677 NA coding downstream 763066 18503640 ~ 18512085 (-)
LOC103047794 mapt,LOC108274153,LOC108441162 coding downstream 776795 18452946 ~ 18498356 (-)
LOC111192385 NA coding downstream 798030 18474987 ~ 18477121 (-)
LOC103033508 si:ch211-255p10.4,brsk1,LOC108441159,LOC107598587,LOC108247084,LOC103033508,LOC107557374,LOC108274928,LOC107654020,LOC107658484 coding downstream 865233 18388678 ~ 18409918 (-)
LOC103038385 prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040 coding upstream 70423 19422900 ~ 19436284 (-)
mms19 mms19,LOC107578808 coding upstream 104823 19457300 ~ 19487247 (-)
rbp3 LOC108437312 coding upstream 251764 19604241 ~ 19606942 (-)
LOC103040263 NA coding upstream 263934 19616411 ~ 19623377 (-)
LOC103045380 NA coding upstream 275123 19627600 ~ 19632328 (-)
G37776 col1a1b,LOC108444293,LOC108273947 non-coding downstream 9972 19262976 ~ 19265179 (-)
G37712 NA non-coding downstream 132630 19142219 ~ 19142521 (-)
G37711 NA non-coding downstream 136458 19138466 ~ 19138693 (-)
G37677 NA non-coding downstream 367183 18869128 ~ 18907968 (-)
G37682 NA non-coding downstream 383236 18890061 ~ 18891915 (-)
G37829 ubtd1,LOC106578996,LOC103038242 non-coding upstream 137359 19489836 ~ 19508582 (-)
G37828 ubtd1b,ubtd1,LOC108437310,LOC107693664,LOC107720068 non-coding upstream 156989 19509466 ~ 19514603 (-)
G37834 NA non-coding upstream 168594 19521071 ~ 19521393 (-)
G37895 NA non-coding upstream 305042 19657519 ~ 19658113 (-)
G37916 NA non-coding upstream 424420 19776897 ~ 19792611 (-)
G37616 NA other downstream 640053 18633578 ~ 18635098 (-)
G37603 NA other downstream 701975 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 957194 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 1479163 17789951 ~ 17795988 (-)
cntd1 NA other downstream 1570128 17692497 ~ 17705023 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 191748 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 465791 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 1159194 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 2520843 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 2661028 22013505 ~ 22038504 (-)

Expression


Co-expression Network