G37812 (mms19,LOC106578995)


Basic Information

Item Value
gene id G37812
gene name mms19,LOC106578995
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19481056 ~ 19484915 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51016
GAGCGGTAGGAGGAACTCTGCGAACCGCGGCGTCCCTGTCAGAACTCCCCGTAGAGCCAGGATGAGCTCCTCCTGCGTGATACCATGAGCATCGTTGGGTGGAGGTGTGAAGTCTATGGGGAAGTAGCAGGATGTGACTTCAAAAAATTCTTCTGTAAACTGACTGAGGTCGTAGCCTCTGTGGATGATGTTTCTTGCTATCTGGAACGCCAGCAGGAGGTTACGAGGATCTCTCTCTCCGTCTACAGCCTGAACAAATCCAAAAACGAAGTCTGGGCCCAAACCCTTCAGctCATCCTCTCTGGACCCCATGAGGCTGATCAGCATGTTGTAGACACACGATCGCTCAGCCAACATCAGGGACTGCACATTTACATCCTGGAAGAGGGATCTCAGGATGGATACTGCAGAAC

Function

symbol description
mms19 Predicted to be involved in several processes, including iron-sulfur cluster assembly; positive regulation of double-strand break repair via homologous recombination; and protein maturation by iron-sulfur cluster transfer. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in cytoplasm. Predicted to be part of CIA complex and MMXD complex. Orthologous to human MMS19 (MMS19 homolog, cytosolic iron-sulfur assembly component).

NR:

description
PREDICTED: keratin, type I cytoskeletal 18-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51016 True 413 TUCP 0.52 6 19481056 19484915

Neighbor

gene id symbol gene type direction distance location
LOC103038698 zdhhc16,zdhhc16b,LOC108444288,LOC108273908,LOC107602426 coding upstream 25703 19436361 ~ 19455353 (+)
fam20a fam20a coding upstream 62304 19391442 ~ 19418752 (+)
LOC103044175 NA coding upstream 95202 19361821 ~ 19385854 (+)
dcxr dcxr coding upstream 152233 19317712 ~ 19328823 (+)
rfng rfng,LOC106610281 coding upstream 169913 19293604 ~ 19311143 (+)
LOC103040580 mapk8b,mapk8,LOC108437314,LOC107709004,LOC106962379,LOC106579004,LOC103040580,LOC108274025,LOC107720002,LOC107388204,LOC107653969,LOC101073575 coding downstream 223750 19708665 ~ 19734677 (+)
LOC103042203 NA coding downstream 355391 19840306 ~ 19849320 (+)
LOC103045523 LOC108437318 coding downstream 809324 20294239 ~ 20299561 (+)
LOC103030679 LOC108437319 coding downstream 1204751 20689666 ~ 20691726 (+)
LOC103031004 LOC103031004,LOC108274330,LOC108437322,LOC107726267,LOC107653975,LOC107693649,LOC107719927 coding downstream 1217345 20702260 ~ 20708857 (+)
G37767 NA non-coding upstream 4478 19474622 ~ 19476578 (+)
G37751 NA non-coding upstream 138262 19342099 ~ 19342794 (+)
G37735 NA non-coding upstream 266238 19214568 ~ 19214818 (+)
LOC111192409 NA non-coding upstream 517020 18963237 ~ 18964036 (+)
G37652 NA non-coding upstream 668105 18812739 ~ 18812951 (+)
G37862 NA non-coding downstream 172590 19657505 ~ 19658477 (+)
G37861 NA non-coding downstream 218333 19703248 ~ 19739691 (+)
G37882 NA non-coding downstream 255954 19740869 ~ 19741119 (+)
G37930 NA non-coding downstream 405600 19890515 ~ 19963972 (+)
G37935 NA non-coding downstream 520997 20005912 ~ 20006127 (+)
G37749 NA other upstream 149395 19329368 ~ 19331661 (+)
LOC103022762 NA other upstream 773328 18645635 ~ 18707728 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other upstream 1104711 18371378 ~ 18376345 (+)
G37404 NA other upstream 1367130 18107564 ~ 18113926 (+)
LOC103046566 NA other upstream 1381077 18063983 ~ 18099979 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other downstream 3984 19488899 ~ 19511441 (+)
G37943 NA other downstream 670813 20155728 ~ 20158339 (+)
G38079 kif22,LOC107664627 other downstream 1534254 21019169 ~ 21030797 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 1624165 21109080 ~ 21128764 (+)
plce1 plce1,LOC107743958 other downstream 1681653 21166568 ~ 21296823 (+)

Expression


Co-expression Network