G37829 (ubtd1,LOC106578996,LOC103038242)


Basic Information

Item Value
gene id G37829
gene name ubtd1,LOC106578996,LOC103038242
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19489836 ~ 19508582 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51036
aaaaaaataaaaaatgtgtgttcGATAAGAGCAGCTCACCATGTGGCAGTGTGATACTTGCTCCATCCACTATCGCCTGAGCTAGCTCGTGGTCGTTGGACTCCAGAGCCACAGCTGCTGCTTTCAGGGCATCCCAAATCTCCTTCCGGCCCTCGAACGCTGGAGCCGTGTCCCAGAACTCGTCCCTCTTACTGCGGAGCTGACCCTCGGTCATGGGGTAGTCACTCTTCCACCTGGGCTTGTCTTTCTTCAGTGGCTCGTTACGGCTCCACGCTTCCTCTGACTCCTGCCACCTCGAGATGATCCCTGTCCGCGGGACTCCTGCCGTTCTCTGCCCACACATCCTCCCATGGTTCGGTCAGATAAACACGAGCCACATTGTTCGCTGGCTGCTGCTATTGATCACGACCTGAAAGGGGGAGCTGGAGCTTCGCACACAGCTGTGTTGTGGTCATCAACATGCGGCTGTTTAAACAGGAAAGCCCTGTTTAAATACAGGTGGATTGTTTTGGCAGGGTTTTTCCCCTCACCTGTAGCTTTAACTGAGCTGGGGACTTCTCCTCACCTTCAGACGGCTTTAGCTTGTGGGAGAGGTGTTAACGCTTAGATAGATAGCTCCAGCAAGCAACACTAAGACTGCAAGTGGGCAAGTGTGGGCTTGTAGTTGGGGTTATGTAGTTAGCTGGAAAGAAAGCAGGCAGGCGGACGCTGTTCTCTGTTCTGGAACACCTTGTTCTGTTTAACGTGGCTATTTCATGGGGTTCACCAATCAAATGGTGGGAAACTGTTTTGTTAAACTAATAAACTGAAACAGGAAAAATTAGGAAAAAGCTCCATACCTATTTTTGAGCTTGGTTTCAGTTTCTAAACGTCTAaactgttagcttagctagttagttaactagCCAAGATAACCAACCAACTAAACTAGTTAACTTTGCTAACTCAAGTAACGTAGGTAGCGAGCTTGTTAACTAATACGGACACACTAGGCTAGATAGATAACTTAGCTAAGTTTCACCAATCAAGTGGTAgcaaattattttgtaaaaataataaacttaaaCAGTAAAGGTTAGGAAAAAGCTCCATGGCT

Function

symbol description
ubtd1 Orthologous to human UBTD1 (ubiquitin domain containing 1).

NR:

description
PREDICTED: ubiquitin domain-containing protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51036 True 1096 lncRNA 0.47 2 19489836 19508582

Neighbor

gene id symbol gene type direction distance location
mms19 mms19,LOC107578808 coding downstream 2589 19457300 ~ 19487247 (-)
LOC103038385 prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040 coding downstream 53552 19422900 ~ 19436284 (-)
lrrc45 lrrc45 coding downstream 136047 19342029 ~ 19353789 (-)
LOC111192386 rac3b,rac3,LOC100712409,LOC107571767,LOC108444292,LOC106535622,LOC106610298 coding downstream 148888 19330667 ~ 19340948 (-)
LOC103043551 LOC108444285,LOC108273949 coding downstream 198826 19279986 ~ 19291010 (-)
rbp3 LOC108437312 coding upstream 95659 19604241 ~ 19606942 (-)
LOC103040263 NA coding upstream 107829 19616411 ~ 19623377 (-)
LOC103045380 NA coding upstream 119018 19627600 ~ 19632328 (-)
frmpd2 LOC108437313 coding upstream 169867 19678449 ~ 19708609 (-)
LOC103041296 LOC108437306,LOC108274024 coding upstream 232551 19741133 ~ 19780495 (-)
G37775 NA non-coding downstream 108904 19261479 ~ 19380932 (-)
G37771 col1a3,LOC108444293,LOC106610502,LOC106589632 non-coding downstream 137359 19275151 ~ 19352477 (-)
G37776 col1a1b,LOC108444293,LOC108273947 non-coding downstream 224657 19262976 ~ 19265179 (-)
G37712 NA non-coding downstream 347315 19142219 ~ 19142521 (-)
G37711 NA non-coding downstream 351143 19138466 ~ 19138693 (-)
G37828 ubtd1b,ubtd1,LOC108437310,LOC107693664,LOC107720068 non-coding upstream 884 19509466 ~ 19514603 (-)
G37834 NA non-coding upstream 12489 19521071 ~ 19521393 (-)
G37895 NA non-coding upstream 148937 19657519 ~ 19658113 (-)
G37916 NA non-coding upstream 268315 19776897 ~ 19792611 (-)
G37893 NA non-coding upstream 289995 19798577 ~ 19799242 (-)
G37616 NA other downstream 854738 18633578 ~ 18635098 (-)
G37603 NA other downstream 916660 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 1171879 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 1693848 17789951 ~ 17795988 (-)
cntd1 NA other downstream 1784813 17692497 ~ 17705023 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 35643 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 309686 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 1003089 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 2364738 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 2504923 22013505 ~ 22038504 (-)

Expression


Co-expression Network