LOC103045068 (antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085)


Basic Information

Item Value
gene id LOC103045068
gene name antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19544225 ~ 19601284 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51038
tttaagagtttaaaaaaaaaaacagtaaaattaaagcagtttacGTCATTATTGACTGTTAGTTGCTTGGCTTTTTGTTCCCAAAGTGAGTAAGTGGGTTGGATTAAACAGTTCagtgcagtttagtttagttcagttcacATTCTCATTTAgttgtaatttattttgttgtcaCGAAGCCGCTTTAGAGAAGTTTGGGCAATGGAGTCAAGCTTTGGCTAGTTTTGGATGAACCAAAGGGAAGAGTTTTGGACCATCGTTTGCTACGTTGTCCcgttagaaaaagaaaaaacggtGGTTTGTCTCAGGTTAGCCTGTTGCAAGAATAATGTAAGTCGCAaagttttgatattttatttgtgtcaAAATGTGTTAGTCTGATGCTTTTGGTACGTTGTAGAGTTCAGCAGCTGGATAAAATGTGTACGTTTTACAAGtctgtttattttacacaatgtacaaaattgtattttatacaaGTTACAGGataattaaagtaataattaGTAAAATACACAATTATACAAAGATGcacattttacagattttaccaaattgtgcATTGTATACAAATTttgcaaattaaaaaatgttggctaACAAAAGTACAATTTGACAGTTTGAAGTTTTGCTAAATTGTAGATTACAATTGTGTAAAagtctagaaaaaaaaaagttaaaattgttacatattttaaaattttttaaGATTTGTTGATTAAGTGACAGTTGAGAATCTGCAGGTGTGGAAAGGTGTGGAGTCCCCAGATGATCCAGTTTCagctttgtttgctttttttttccttcaataGCAATTCCTCTTAATGTACACAGTCAGGTCAATATTTTTCTCATGATAAATGTTCTATATTCCCatgactgtactgtatgttgatACTCGTCCTTCCTTCGAGCTTCTTTTTGTAACGTCACCAAGTACACATCATGACTGCAGGGCAGTTCACAGTATCTAATTTATTATCCCCCGGCTACAGTACGTACAGTAAGGGACTTGAATACGACAAGGTGTCCTCTGTAAACAGCAGGACACTGTGCATGAACCAATCCAAAGAAATCTTTTCTACTGTTCTTTTCTCTCCGTTTATTTCATTGcagtttgttttacactttttttattgtatttccccccccccccacatgtGATTGACACTGTCCGCTGTCGATTTACACTATCCGTCAGTCAGTGGTTAGATTTCCACGTCCTGCCAAAGAAATCATTGACTATAATTAACTAAATATGCAGTGGAATGTAAAATGACTACGAACCTTTGCTCTTGTTTACTGCCaaaccatgttgccagttatttCGTTGTAACCCTTATTGGTTTTTCAGACACTCAGTCTAATTATGTGTGAGCTGTATTATTGGATACAGGAACGCTGTAACGAGTCATTGTCTCGCATTGTCTTTTAATTTAGTATCGCCTGTTAACAACAGTATTGAAGCAACTTGTGAAAGGCGC
>XM_022669309.1
cacacacacacacacacacacacacacacacacagtctcctcCACAGCAGGCTGCAGACCTCCGGCTCGCGCTAACTCTCCCAGTCCAGCCAGCTCTCACGCGGCGCGTCTTACTGGTTTTTGGACTAAATCTGAACTGGATTCAGACAGGCTGCCCAGAGACTGGAGGATCGCGCGCGAACACGGGTCCAAAAAAGACCCAAAGAGAAGTCCGGCCGAGCTGCTCTTTGTGTTAATGCGCCCTGGAGTCCAGCGCGCGCTGCGGATAATGCTGTGAACGGGCTCTGGTGGTTCTGATGCGCGTTCTGTTGGGTTCTGTTGGCTTCTGCGCGGTTCTACACGTCTCTATTGGGTTCTGCTGGGGTGTATTGTGTCCTGTTGGGTTCTGTGAGTGAGGACTGAGGATGGCGAGTTTTGGAAAGGGGGCTCTGCTGTTCCTCGCGCTCTCGGGATGTTTGGTTCTGTGCGCGTTCTCGGAGACAGCGGCGGAGGCGCACGAGGAGGAGGATCAGAGATCGTGCCAGGGTGCCTTCGATCTGTACTTCGTTCTAGATAAGTCAGGAAGTGTGAAGCACCACTGGCATGAGATCTACTCTTTTGTTGAGAGTCTGGCAGAGAAGTTTATCAGCCCGCTGTTACGGATGTCCTTCATTGTGTTCTCGTCCAGAGGAAACACCATAATGAAGCTGACTGAAGATAGGGAACGCATCACAAAAGGCCTGAACGTTTTAAGGAGAGAGATCCCAGGAGGAGACACGTTTATGCACCTCGGCCTGGAGAAGGCTAATGAACAGATCCATCAGGAGAATTTCGGTAAAGCCAGTGTGATCATTGCTCTGACGGACGGGGAGCTGAATGAACAGCAGCTGGTTGCAGCACAACAAGAGGCTGCCAAAGCAAGAGGGCTGGGTGCTATTGTGTACTGCGTCGGAGTTAAAGACTTCAACGAGACACAGCTGGCCACCATAGCGGACACCATCGAGCACGTGTTTCCTGTGACGGGAGGATTCCAGGCTCTTAGAGGAGTGATTGACTCGATCATCAAGAAGTCCTGTATCGAGATCTTGGCAGCTGAGCCATCGAGCGTCTGCGCAGGAGAGTCCTTTCAAGTGGTGGTCAGAGGAAACGGCTTCCTCCACGCCAGGAAGATAGACCAGGTGATGTGCAGCTTCAAGGTCAATGACACGGTCACCTTAAATGTGAAGCCTGATGGTATAGAAGACACGTATCTACTGTGTCCGGCACCGGTCATAGACGAAGTTGGGAAGGTGGTTTACCTGCAGGTCAGCATGAACGAGGGTCTGTCGTTCATCACCAGCTCAGTACACATCACCACCACCGAATGTTTTGACGGGACTATTCTGCTGATCACCCTGCTGGTCCTCTTCTTGTTATTGGCTCTGCTGTTCATGTGGTGGTTCTGGCCGCTCTGCTGCACAGTAGTCATAAGggagcctcctcctcctccaccaccagagCCAGAGTCTGATGATGAAGACGGCATGCCCAAGAAGAAATGGCCTACTGTGGACGCGTCATACTACGGAGGACGAGGAGTCGGAGGGATAAAACGAATGGAgGTGCGCTGGGGCGGGAAAGGCTCGACTGAAGAAGGAGCCAAGCTGGAGAAACCCAAAAACGCAGTGGTGAAAATGCCTGAGCAGGAGTTCGAGCCGTTTGAGCCCAAGCCCAAAAAACACGGGAGCAAGAGAACCGCCCAGGACAGGAAGTGGTATTCTCCAATCAGGGGTAAACTGGACGCGATCTGGGCTCTGTTTCGTCGTGGTTATGACCAGGTTTCGCTGATGAGACCACAACCAGGAGATCATGGTCGATGCATCAACTTTACGCGGGTGAAAGAAGAGGCAGCGAAAGCTCCGCCCCGTACCCAGTGCCCAGCACCGCCTCCGCCGGACTACCGCCCAGCCCCCAACCCCATGAGTCCACCTCCACAATCCCCTCCGAAGGGGCCGCCCCAGGCCCAACTGCCACCGGGACCGCCAGGACCACCCCCGGCCCGAGTGCCACCCGGTCCTCCCTGCCCACCTCCCGCCCGGCCCCCTCCCAAACCCTGAGGCCTGGCAGCACGAGCACCAGCACAGTTCAATGCAGTTCATTTATCCAGCCAAAATATGCTTCTCTCACCGTAGAAAACAAACTCAAACCGTGATATTTATCAGTGTCAGGGTTTGGTAGAAGACTCCGGTATGTGGTTTGTTGCTggacagcaaaaataaataaatattgtaacaATATCAAAGAAAATAACAACTGCAGTAAGGGAAAGATGCTAATATCAACTACTGAATATACCACATGCGGCAACGTCAATTAAAGCCAAAATTAGCATAGTATCATCTGGAAAATATTCTGAGTGTCTGAGTCTGACTTCTTCAGTTTAATGTAGGTAACAAGCAATGCAGCCATGAACATTATagattagcatgatgctaactgcatGCCTGAGTCAAGCCTTTGCCTCAAACCAGCGGTAGCCTATGTGTAATGATTTACGCATGcagttagcatgatgctaattaATGTTCTGTTTagcttccattacttgttagctacatttgcTGTATAGCTTCAGTGATAAAATTAAAGGAGCAGAAACTTCAGATACTGAAAATATCAGCGATGATTGACTACAATTGAAGTCAGAAAGGGAAATTGTGTTAATTTGCTTTTTTACTTTAAGAACcgtttaagagttaaaaaaaaacagtaaaattaaagcagtttacGTCATTATTGACTGTTAGTTGCTTGGCTTTTTGTTCCCAAAGTGAGTAAGTGGGTTGGATTAAACAGTTCagtgcagtttagtttagttcagttcacATTCTCATTTAgttgtaatttattttgttgtcaCGAAGCCGCTTTAGAGAAGTTTGGGCAATGGAGTCAAGCTTTGGCTAGTTTTGGATGAACCAAAGGGAAGAGTTTTGGACCATCGTTTGCTACGTTGTCCcgttagaaaaagaaaaaacggtGGTTTGTCTCAGGTTAGCCTGTTGCAAGAATAATGTAAGTCGCAaagttttgatattttatttgtgtcaAAATGTGTTAGTCTGATGCTTTTGGTACGTTGTAGAGTTCAGCAGCTGGATAAAATGTGTACGTTTTACAAGtctgtttattttacacaatgtacaaaattgtattttatacaaGTTACAGGataattaaagtaataattaGTAAAATACACAATTATACAAAGATGcacattttacagattttaccaaattgtgcATTGTATACAAATTttgcaaattaaaaaatgttggctaACAAAAGTACAATTTGACAGTTTGAAGTTTTGCTAAATTGTAGATTACAATTGTGTAAAagtctagaaaaaaaaaagttaaaattgttacatattttaaaattttttaaGATTTGTTGATTAAGTGACAGTTGAGAATCTGCAGGTGTGGAAAGGTGTGGAGTCCCCAGATGATCCAGTTTCagctttgtttgctttttttttccttcaataGCAATTCCTCTTAATGTACACAGTCAGGTCAATATTTTTCTCATGATAAATGTTCTATATTCCCatgactgtactgtatgttgatACTCGTCCTTCCTTCGAGCTTCTTTTTGTAACGTCACCAAGTACACATCATGACTGCAGGGCAGTTCACAGTATCTAATTTATTATCCCCCGGCTACAGTACGTACAGTAAGGGACTTGAATACGACAAGGTGTCCTCTGTAAACAGCAGGACACTGTGCATGAACCAATCCAAAGAAATCTTTTCTACTGTTCTTTTCTCTCCGTTTATTTCATTGcagtttgttttacactttttttattgtatttccccccccccccacatgtGATTGACACTGTCCGCTGTCGATTTACACTATCCGTCAGTCAGTGGTTAGATTTCCACGTCCTGCCAAAGAAATCATTGACTATAATTAACTAAATATGCAGTGGAATGTAAAATGACTACGAACCTTTGCTCTTGTTTACTGCCaaaccatgttgccagttatttCGTTGTAACCCTTATTGGTTTTTCAGACACTCAGTCTAATTATGTGTGAGCTGTATTATTGGATACAGGAACGCTGTAACGAGTCATTGTCTCGCATTGTCTTTTAATTTAGTATCGCCTGTTAACAACAGTATTGAAGCAACTTGTGAAAGGCGCATAAACTGTTCtccttttttatacatttattaataaaagtcaACTTTCGAGCTTTTA

Function

symbol description
antxr1c Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in toxin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane. Is expressed in cranial vasculature; spinal cord; tail bud; and trunk vasculature. Human ortholog(s) of this gene implicated in GAPO syndrome and colorectal carcinoma. Orthologous to several human genes including ANTXRL (ANTXR like).
antxrl Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in toxin transport. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane.

NR:

description
PREDICTED: anthrax toxin receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51038 False 1484 lncRNA 0.35 2 19544282 19549029
XM_022669309.1 True 4244 mRNA 0.45 18 19544225 19601284

Neighbor

gene id symbol gene type direction distance location
mms19 mms19,LOC107578808 coding downstream 56978 19457300 ~ 19487247 (-)
LOC103038385 prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040 coding downstream 107941 19422900 ~ 19436284 (-)
lrrc45 lrrc45 coding downstream 190436 19342029 ~ 19353789 (-)
LOC111192386 rac3b,rac3,LOC100712409,LOC107571767,LOC108444292,LOC106535622,LOC106610298 coding downstream 203277 19330667 ~ 19340948 (-)
LOC103043551 LOC108444285,LOC108273949 coding downstream 253215 19279986 ~ 19291010 (-)
rbp3 LOC108437312 coding upstream 2957 19604241 ~ 19606942 (-)
LOC103040263 NA coding upstream 15127 19616411 ~ 19623377 (-)
LOC103045380 NA coding upstream 26316 19627600 ~ 19632328 (-)
frmpd2 LOC108437313 coding upstream 77165 19678449 ~ 19708609 (-)
LOC103041296 LOC108437306,LOC108274024 coding upstream 139849 19741133 ~ 19780495 (-)
G37834 NA non-coding downstream 22832 19521071 ~ 19521393 (-)
G37828 ubtd1b,ubtd1,LOC108437310,LOC107693664,LOC107720068 non-coding downstream 29622 19509466 ~ 19514603 (-)
G37829 ubtd1,LOC106578996,LOC103038242 non-coding downstream 35643 19489836 ~ 19508582 (-)
G37775 NA non-coding downstream 163293 19261479 ~ 19380932 (-)
G37771 col1a3,LOC108444293,LOC106610502,LOC106589632 non-coding downstream 191748 19275151 ~ 19352477 (-)
G37895 NA non-coding upstream 56235 19657519 ~ 19658113 (-)
G37916 NA non-coding upstream 175613 19776897 ~ 19792611 (-)
G37893 NA non-coding upstream 197293 19798577 ~ 19799242 (-)
G37921 NA non-coding upstream 199276 19800560 ~ 19800813 (-)
G37920 NA non-coding upstream 199664 19800948 ~ 19801247 (-)
G37616 NA other downstream 909127 18633578 ~ 18635098 (-)
G37603 NA other downstream 971049 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 1226268 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 1748237 17789951 ~ 17795988 (-)
cntd1 NA other downstream 1839202 17692497 ~ 17705023 (-)
c4h10orf128 NA other upstream 216984 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 910387 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 2272036 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 2412221 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 3779361 23380645 ~ 23387442 (-)

Expression


Co-expression Network