G37943


Basic Information

Item Value
gene id G37943
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20155728 ~ 20158339 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51170
gtctcctgtccatttccccgtccagtctccgtctcatgtccagtctccgtcacctgtccagttccccgtccagtctccgtcacctgtccagttccccgtccagtctccgtctcatgtccagtctccgtcacctgtccagttccccgtccagtctccgtcacctgtccagttccctgtccagtctcccgttcaggtctcctgttttccccggcctctccctgccgccagcccccggggtttgtttttacgcgcctcgggagctgcgcgtttagggggaggtttctgtcacgcctgaccctgtttcctgtctgtcctcgtgcctgtgttgtcccacgtgacccgtgcccctgtgttctgcctgtgattttccattacctcatgtctcatttgtagctccacccctt
>TU51173
cccgtccagtctccgtctcatgtccagttccccatccagtctccgtctcatgtccagtctccgtcacctgtccagttccccgtccagtctcagtctcctgtccatttccccgtccagtctccgtctcctgtccagttccccgtccagtctcctgttttccccggcctctccctgccgccagcccccggggtttgtttttacgcgcctcgggagctgcgcgtttagggggaggtttctgtcacgcctgaccctgtttcctgtctgtcctcgtgcctgtgttgtcccacgtgacccgtgcccctgtgttctgcctgtgattttccattacctcatgtctcatttgtagctccacccctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51170 True 404 lncRNA 0.60 2 20155728 20158339
TU51173 False 357 TUCP 0.60 3 20157880 20158339

Neighbor

gene id symbol gene type direction distance location
LOC103042203 NA coding upstream 306408 19840306 ~ 19849320 (+)
LOC103040580 mapk8b,mapk8,LOC108437314,LOC107709004,LOC106962379,LOC106579004,LOC103040580,LOC108274025,LOC107720002,LOC107388204,LOC107653969,LOC101073575 coding upstream 421051 19708665 ~ 19734677 (+)
LOC103038698 zdhhc16,zdhhc16b,LOC108444288,LOC108273908,LOC107602426 coding upstream 700375 19436361 ~ 19455353 (+)
fam20a fam20a coding upstream 736976 19391442 ~ 19418752 (+)
LOC103044175 NA coding upstream 769874 19361821 ~ 19385854 (+)
LOC103045523 LOC108437318 coding downstream 135900 20294239 ~ 20299561 (+)
LOC103030679 LOC108437319 coding downstream 531327 20689666 ~ 20691726 (+)
LOC103031004 LOC103031004,LOC108274330,LOC108437322,LOC107726267,LOC107653975,LOC107693649,LOC107719927 coding downstream 543921 20702260 ~ 20708857 (+)
tnfrsf13b NA coding downstream 566712 20725051 ~ 20733671 (+)
nt5m nt5m,LOC107719901 coding downstream 641781 20800120 ~ 20811142 (+)
G37945 NA non-coding upstream 55878 20099119 ~ 20099850 (+)
G37940 NA non-coding upstream 106913 20048414 ~ 20048815 (+)
G37938 NA non-coding upstream 128568 20026925 ~ 20027160 (+)
G37937 NA non-coding upstream 132382 20023141 ~ 20023346 (+)
G37935 NA non-coding upstream 149601 20005912 ~ 20006127 (+)
G37950 NA non-coding downstream 23237 20181576 ~ 20181834 (+)
G37952 NA non-coding downstream 33073 20191412 ~ 20191686 (+)
G37969 NA non-coding downstream 258534 20416873 ~ 20417180 (+)
G37972 NA non-coding downstream 287510 20445849 ~ 20545637 (+)
G37974 NA non-coding downstream 351340 20509679 ~ 20511186 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 644287 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 670813 19481056 ~ 19484915 (+)
G37749 NA other upstream 824067 19329368 ~ 19331661 (+)
LOC103022762 NA other upstream 1448000 18645635 ~ 18707728 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other upstream 1779383 18371378 ~ 18376345 (+)
G38079 kif22,LOC107664627 other downstream 860830 21019169 ~ 21030797 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 950741 21109080 ~ 21128764 (+)
plce1 plce1,LOC107743958 other downstream 1008229 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 3589130 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 3589232 23747571 ~ 23747643 (+)

Expression


Co-expression Network