G37974


Basic Information

Item Value
gene id G37974
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20509679 ~ 20511186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51212
AGTTCTGCAGTTTAAACACAATAATACATTCATACAGTAATTTTAAtcaagcaacacacacacacacgcacacactcaacCTATTGACCAACCTGCAGTTTACCCTCATAAACCTTTTAATATCCGTTTAAATGTTACAAAGTGTTTTTGTAAAGAGACAGTCACACGTCAGATGTGGAGATCCTACACTACTCAAATATGTCTTCATTTGAGATGTAAATAACAACAGTATTGAAATATCTGTGTGAATCTACCTAACCATGGTTTGACGAAAAAAATTGCAGACCGACCAAGTGccagaaaacagttaaaaacttaaaaaatgaaaagaaaaatatatattatctaaAATGTCTTTgagctgtaaataaaatattttagatgACATCTTTTTGTAAATTAATAGAATAGAAATTTTGATTCTTAAGTGGATAAAttaagtcagtcagtcagtaaacAGTGAGTAGTGGTTGATGGTGAGAATCATTTACAGCATCCAAAATGCAGATGATCAGGACTAGCTTTGTGCTTGTGACGGATGAAAGCAGTAACAGCCCTCTAATTGATACAGAATATAGTGTGTAATGTAGCATCAGGCTACATACAGTACACAGGCACTTCCTAacataattgtgtaaaaaggAAATGTAATGTGTTGTGTGAGGGCACCTACatctacacctacacctacttATCATACCATCAATTATCTATTATTTGTTGCTCTGCTTAGTTTCAGTAAAACTAGTTTAATTtagattaaaggagaaatccggggGGAAACCTGTATGTGACAATAGTACCTCAAAGAGATCCCAACATTAAAACATCACAAAAAGGTAGAAGAAGGTTTAGAAGGTTTAATTGCAATTACAGACTACTTACTCCCTAAATAGTGTACTGTACAAGTCAGGAAATTGCAGATTGTAAGTcgaaattatattatttaatataatatgattagTCCATAATcacattatatatttgtaaaagaACAGTATtctgtatacatttatttagacAGTAAAATTTGAAATCTAGTATATCTGTTGTTAATTGTTGTAGCTTTATGACCTTATGTTAAAGTTTACTTTATAGGGAGTAAGGGTGTCATGCGTTGTCATGTTAGTTACATTATGCAAAGTTACATTATCTGCTGTGCTATGTTGTCACAGTTGTGGACCAAACAATGAtccttcagcagcagcagcagaagagaaAAGTGTACATGAGGAGTGGCACAGTGAGTGTAAATTTGCaaatgttaaagaaaatatattttacagcagAGCTGAAAGAGAGCAGAGAGGTATGTTACATTCCTCTTTTATGTAGCCATTTTATATAGTTTGTATTGGTGCGTCCAAGTCTCTTCATGTTCCAGAAAGAAGAGTGAACTAGAG
>TU51221
AGTTCTGCAGTTTAAACACAATAATACATTCATACAGTAATTTTAAtcaagcaacacacacacacacacacacacacgcacacactcaacCTATTGACCAACCTGCAGTTTACCCTCATAAACCTTTTAATATCCGTTTAAATGTTACAAAGTGTTTTTGTAAAGAGACAGTCACACGTCAGATGTGGAGATCCTACACTACTCAAATATGTCTTCATTTGAGATGTAAATAACAACAGTATTGAAATATCTGTGTGAATCTACCTAACCATGGTTTGACGAAAAAAATTGCAGACCGACCAAGTGccagaaaacagttaaaaacttaaaaaatgaaaagaaaaatatatattatctaaAATGTCTTTgagctgtaaataaaatattttagatgACATCTTTTTGTAAATTAATAGAATAGAAATTTTGATTCTTAAGTGGATAAAttaagtcagtcagtcagtaaacAGTGAGTAGTGGTTGATGGTGAGAATCATTTACAGCATCCAAAATGCAGATGATCAGGACTAGCTTTGTGCTTGTGACGGATGAAAGCAGTAACAGCCCTCTAATTGATACAGAATATAGTGTGTAATGTAGCATCAGGCTACATACAGTACACAGGCACTTCCTAacataattgtgtaaaaaggAAATGTAATGTGTTGTGTGAGGGCACCTACatctacacctacacctacttATCATACCATCAATTATCTATTATTTGTTGCTCTGCTTAGTTTCAGTAAAACTAGTTTAATTtagattaaaggagaaatccggggGGAAACCTGTATGTGACAATAGTACCTCAAAGAGATCCCAACATTAAAACATCACAAAAAGGTAGAAGAAGGTTTAGAAGGTTTAATTGCAATTACAGACTACTTACTCCCTAAATAGTGTACTGTACAAGTCAGGAAATTGCAGATTGTAAGTcgaaattatattatttaatataatatgattagTCCATAATcacattatatatttgtaaaagaACAGTATtctgtatacatttatttagacAGTAAAATTTGAAATCTAGTATATCTGTTGTTAATTGTTGTAGCTTTATGACCTTATGTTAAAGTTTACTTTATAGGGAGTAAGGGTGTCATGCGTTGTCATGTTAGTTACATTATGCAAAGTTACATTATCTGCTGTGCTATGTTGTCACAGTTGTGGACCAAACAATGAtccttcagcagcagcagcagaagagaaAAGTGTACATGAGGAGTGGCACAGTGAGTGTAAATTTGCaaatgttaaagaaaatatattttacagcagAGCTGAAAGAGAGCAGAGAGGTATGTTACATTCCTCTTTTATGTAGCCATTTTATATAGTTTGTATTGGTGCGTCCAAGTCTCTTCATGTTCCAGAAAGAAGAGTGAACTAGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51212 False 1403 lncRNA 0.33 3 20509679 20511186
TU51221 True 1413 lncRNA 0.34 3 20509679 20511186

Neighbor

gene id symbol gene type direction distance location
LOC103045523 LOC108437318 coding upstream 210118 20294239 ~ 20299561 (+)
LOC103042203 NA coding upstream 660359 19840306 ~ 19849320 (+)
LOC103040580 mapk8b,mapk8,LOC108437314,LOC107709004,LOC106962379,LOC106579004,LOC103040580,LOC108274025,LOC107720002,LOC107388204,LOC107653969,LOC101073575 coding upstream 775002 19708665 ~ 19734677 (+)
LOC103038698 zdhhc16,zdhhc16b,LOC108444288,LOC108273908,LOC107602426 coding upstream 1054326 19436361 ~ 19455353 (+)
fam20a fam20a coding upstream 1090927 19391442 ~ 19418752 (+)
LOC103030679 LOC108437319 coding downstream 178480 20689666 ~ 20691726 (+)
LOC103031004 LOC103031004,LOC108274330,LOC108437322,LOC107726267,LOC107653975,LOC107693649,LOC107719927 coding downstream 191074 20702260 ~ 20708857 (+)
tnfrsf13b NA coding downstream 213865 20725051 ~ 20733671 (+)
nt5m nt5m,LOC107719901 coding downstream 288934 20800120 ~ 20811142 (+)
med9 med9,LOC108412951 coding downstream 351463 20862649 ~ 20865785 (+)
G37969 NA non-coding upstream 92499 20416873 ~ 20417180 (+)
G37952 NA non-coding upstream 317993 20191412 ~ 20191686 (+)
G37950 NA non-coding upstream 327845 20181576 ~ 20181834 (+)
G37945 NA non-coding upstream 409829 20099119 ~ 20099850 (+)
G37940 NA non-coding upstream 460864 20048414 ~ 20048815 (+)
G38010 cops3 non-coding downstream 272745 20783931 ~ 20790126 (+)
G38059 NA non-coding downstream 363610 20874796 ~ 20875276 (+)
G38062 NA non-coding downstream 391891 20903077 ~ 20981763 (+)
G38081 rbp4 non-coding downstream 533326 21044512 ~ 21083648 (+)
G38093 NA non-coding downstream 620444 21131630 ~ 21139901 (+)
G37943 NA other upstream 351340 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 998238 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 1024764 19481056 ~ 19484915 (+)
G37749 NA other upstream 1178018 19329368 ~ 19331661 (+)
LOC103022762 NA other upstream 1801951 18645635 ~ 18707728 (+)
G38079 kif22,LOC107664627 other downstream 507983 21019169 ~ 21030797 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 597894 21109080 ~ 21128764 (+)
plce1 plce1,LOC107743958 other downstream 655382 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 3236283 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 3236385 23747571 ~ 23747643 (+)

Expression


Co-expression Network