G38010 (cops3)


Basic Information

Item Value
gene id G38010
gene name cops3
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20783931 ~ 20790126 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51267
ATTTTTTGAACAAAGAAGTCCAGTCTTTTTATTGTTACGTTTGTGGCGTTTCCGCTTCAACAttgataaataaaacactgacgaAACAGGGATGGTGTATATGAGTGCGCTGtgaaagaaacaaaccaaattaTCATCATTTCAGACAAGTTTAGTCCATACTCAATAAAACGATTCTTCCTGATGATGGGTCTCCAGGTCAGAGAGGCAGGGCAGTGGGTGGCGCTGTGGCCTCAGGAGTAGGAGGACGTCTTGCTGCCAACGTCGTCTTCTTGTGTTCCCATACTCTTTGCACAAACTGGGGATTgacagtgatctcctgatccaTGGACTTTAGCTTCTCATCTAATTCTATACACTTCAGCATCTCTTGGTCAATTTTGTGGAGCATTGCGGGGTTGTTGTATTTCTCAGGGTTGTCATGGAAACAGACCATGCCATCTTTCTGATTGATACTAGCataaatctctccatcttcAATCATGTGTAGGACGTATTTCTCAGCTTCCTGAGGGCCGGAGAGCTGCACCCGACTCGCCATGTCTTGTAAGGACAACGTCAGGAAGGTCTTGGTTAGCCTCTGGATGTTCTTCTTGTAGAGCGAGGACAGACACTGCTTGACCAGGCCCGTGTTGTTGTCCCGGGTGAACGTCTCGCTGTGCTTGTTGACCACGTTGCGCAGTTCTGCAGGGTTGTTGGTGGCGTACACCTGGGCCAGCTCGTGGTAAGCATTACTGAGAGGCTTTATGAACCTGCCCACGATCTGTGACGTGTATTTGGGGAGCTGCTGCACTTTGCCGTGAAGAATGAGGGACACCAGAATGTACTTCTTATAAGCTTCTAGCATGATGTGACTGACTGCCATTGCTGGAGTGGTTATTGCCTGctcaaaaaaatacagtgcCCGTTCAAAGTTCTTCAGACCCGTGTAGATCATCCCACCATAATAGTAGTAACACAGAAAGTGCTTTGCGTCGTACGCTCCGTTCTCCTTGCAGATGTCCATCATGTCCAGCTCCAGGAAGGGAACTGCAGGCTTGAAGCACTTTGCCAGCAAGCATAACTGAATAACACAGAATGAGAACGGTCAGATCCACATTAATAACACATTATTAACTCATTTTTACATACT

Function

symbol description
cops3 Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of COP9 signalosome. Orthologous to human COPS3 (COP9 signalosome subunit 3).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51267 True 1132 lncRNA 0.46 7 20783931 20790126

Neighbor

gene id symbol gene type direction distance location
tnfrsf13b NA coding upstream 50260 20725051 ~ 20733671 (+)
LOC103031004 LOC103031004,LOC108274330,LOC108437322,LOC107726267,LOC107653975,LOC107693649,LOC107719927 coding upstream 75074 20702260 ~ 20708857 (+)
LOC103030679 LOC108437319 coding upstream 92205 20689666 ~ 20691726 (+)
LOC103045523 LOC108437318 coding upstream 484370 20294239 ~ 20299561 (+)
LOC103042203 NA coding upstream 934611 19840306 ~ 19849320 (+)
nt5m nt5m,LOC107719901 coding downstream 9994 20800120 ~ 20811142 (+)
med9 med9,LOC108412951 coding downstream 72523 20862649 ~ 20865785 (+)
LOC103033426 NA coding downstream 200855 20990981 ~ 20996657 (+)
emc9 emc9,LOC106579550,LOC106590414 coding downstream 207989 20998115 ~ 21002011 (+)
cep55 NA coding downstream 241776 21031902 ~ 21043890 (+)
G37972 NA non-coding upstream 238294 20445849 ~ 20545637 (+)
G37974 NA non-coding upstream 272745 20509679 ~ 20511186 (+)
G37969 NA non-coding upstream 366751 20416873 ~ 20417180 (+)
G37952 NA non-coding upstream 592245 20191412 ~ 20191686 (+)
G37950 NA non-coding upstream 602097 20181576 ~ 20181834 (+)
G38059 NA non-coding downstream 84670 20874796 ~ 20875276 (+)
G38062 NA non-coding downstream 112951 20903077 ~ 20981763 (+)
G38081 rbp4 non-coding downstream 254386 21044512 ~ 21083648 (+)
G38093 NA non-coding downstream 341504 21131630 ~ 21139901 (+)
G38101 NA non-coding downstream 482006 21272132 ~ 21272572 (+)
G37943 NA other upstream 625592 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1272490 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 1299016 19481056 ~ 19484915 (+)
G37749 NA other upstream 1452270 19329368 ~ 19331661 (+)
LOC103022762 NA other upstream 2076203 18645635 ~ 18707728 (+)
G38079 kif22,LOC107664627 other downstream 229043 21019169 ~ 21030797 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 318954 21109080 ~ 21128764 (+)
plce1 plce1,LOC107743958 other downstream 376442 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 2957343 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2957445 23747571 ~ 23747643 (+)

Expression


Co-expression Network