LOC111192388


Basic Information

Item Value
gene id LOC111192388
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20546125 ~ 20549218 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51293
CCTGAACAGGCAATTTTATGTTACATGATGCTGCTTAGTTAATTGAGAGTTTGCACATGCGCACTAAGGCACAAGAAAGAACGCGGGGTTTTCAAGTGCGGCACTGCAGGGGCTCTCAAGCGCAGCACAGCAGGGGCTGTGATCACTCCTCTCTCAGGCAGCTGCTTCAAGTTTAACGGGGTTAGGAAGATTTTAGTGAATATGCACGCTGCCAGAAAAAGACTCAATGGAGTAGATCTGTGAGGAGTTTTTTCGAGTTACCAAACAAAGACCTGCTAGAAACTTTCAGAGCTGCCATGGAAAAGAACACCACCAAACTACTGAGACTCTACCGTGCCCGGAAGGGAGCTTTTGGGCATGATCTGGAAGACCTATTTGAAAAAACTTGATGAAAAGACATCTGATGTTGTCGCCCATCGAAAGAGTGCTGTGCTGGAAGGATTGCCTTCGTTTTTGAGAGAAGATCCTGTAAAGTTGTTTTAGAAATGTTTGGACACAGATCCAGAAGATGAACAGACCCAAAGGGGTATCTGTTGCAAGACTTGTGGTTTTTATGAGGACAATTGTCTCTGCTGCAGCTCACCAGCAAATGAACATTGCCATTGTGCTGGAGGAGACCATAGTTCTGGATGGACTCTGCGACACCCCTACAGGCTTGGCATACCTCTTTGGCCTTTTCTGTGCTCTAAACCTTTCTTATCCAAAATTCTGAACTCCAAATTCAGATCCACTTTAATGTATAAATGCAGTGCTTGACATGTTGGTATACTGTATgatttgttgtgtttaaatacatgCAGGTGTTGTTGCTAGTGTTGCAGGGTTCCGATTGGAAGCATTTTATCAAACGTGGCATCAGAGGTGACTTGTGTTGGATTTGATCCTTGTTAAAATGAAACTCTGACATATCTACATTATTGGCAAAATAGCTTTTTATGTTGCCCTACATTTTGTCCtgaatctcttttttttacattttgaatgcCATTCTCGAGATGTTTTTGGACCTTGGCTCAAGATACAAATgacatgtactttttttttttttttcccaaaataaATTTTATCTGCAAGCCAGTGAACATGGTCACAGTAGTGAACTCCAGGATTTTTAGGTTTTGGAATTCCAACGGATGtctttttttaggaaaaaaaagaaattgaggTTTGATGTGCAGTGTTCAAGTATTGTGCAATGCCTGTTTGCAAAGATGCTCCTctaaa
>XR_002649893.1
ACAGGCAATTTTATGTTACATGATGCTGCTTAGTTAATTGAGAGTTTGCACATGCGCACTAAGGCACAAGAAAGAACGCGGGGTTTTCAAGTGCGGCACTGCAGGGGCTCTCAAGCGCAGCACAGCAGGGGCTGTGATCACTCCTCTCTCAGGCAGCTGCTTCAAGtaCCAGTCATTGGGGAAAGAAGTTAGGTTCCAATTAAGCACTAATTTGGCCAGTTTAACGGGGTTAGGAAGATTTTAGTGAATATGCACGCTGCCAGAAAAAGACTCAATGGAGTAGATCTGTGAGGAGTTTTTTCGAGTTACCAAACAAAGACCTGCTAGAAACTTTCAGAGCTGCCATGGAAAAGAACACCACCAAACTACTGAGACTCTACCGTGCCCGGAAGGGAGCTTTTGGGCATGATCTGGAAGACCTATTTGAAAAAACTTGATGAAAAGACATCTGATGTTGTCGCCCATCGAAAGAGTGCTGTGCTGGAAGGATTGCCTTCGTTTTTGAGAGAAGATCCTGTAAAGTTGTTTTAGAAATGTTTGGACACAGATCCAGAAGATGAACAGACCCAAAGGGG

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU51293 True 1224 lncRNA 0.41 5 20546125 20549218
XR_002649893.1 False 575 lncRNA 0.45 6 20546822 20549213

Neighbor

gene id symbol gene type direction distance location
LOC111192421 NA coding downstream 687499 19851884 ~ 19858626 (-)
LOC103041897 vstm4,LOC108437315,LOC107720466,LOC107708899,LOC107653934 coding downstream 729944 19802002 ~ 19816181 (-)
LOC103041296 LOC108437306,LOC108274024 coding downstream 765630 19741133 ~ 19780495 (-)
frmpd2 LOC108437313 coding downstream 837516 19678449 ~ 19708609 (-)
LOC103045380 NA coding downstream 913797 19627600 ~ 19632328 (-)
LOC103037418 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding upstream 186085 20735303 ~ 20781329 (-)
cops3 cops3 coding upstream 234711 20783929 ~ 20797947 (-)
rasd1 rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420 coding upstream 317582 20866800 ~ 20869080 (-)
pemt pemt,LOC107719881 coding upstream 327216 20876434 ~ 20968546 (-)
lmf1 lmf1,LOC107580192 coding upstream 432187 20981405 ~ 20990118 (-)
G38016 NA non-coding downstream 34939 20457704 ~ 20511186 (-)
G37970 NA non-coding downstream 128945 20416871 ~ 20417180 (-)
G37966 NA non-coding downstream 200955 20344882 ~ 20345170 (-)
G37963 NA non-coding downstream 260920 20284958 ~ 20285205 (-)
G37962 NA non-coding downstream 271738 20274013 ~ 20274387 (-)
G38032 NA non-coding upstream 63057 20612275 ~ 20612602 (-)
G38048 NA non-coding upstream 217816 20767034 ~ 20767339 (-)
G38052 nt5m,LOC107719901 non-coding upstream 254837 20804055 ~ 20811142 (-)
G38179 med9,LOC108412951 non-coding upstream 313583 20862801 ~ 20865721 (-)
G38180 NA non-coding upstream 320800 20870018 ~ 20870550 (-)
c4h10orf128 NA other downstream 720473 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 944841 19544225 ~ 19601284 (-)
G37616 NA other downstream 1911027 18633578 ~ 18635098 (-)
G37603 NA other downstream 1972949 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 2228168 18282490 ~ 18317957 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 1324102 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 1464287 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 2831427 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 2916001 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 3133908 23683126 ~ 23720782 (-)

Expression


Co-expression Network