G38048


Basic Information

Item Value
gene id G38048
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20767034 ~ 20767339 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51313
atttttgtgatatatcgatatgtattatttacagacaggcgttttttagcggcgtcagttcactgcagccCTGAACATAGCCGGGCTAcgtccgcacctaaaacccacccgcgatgaagcgaaaccgaccctaaccgagcggcgctccgctccgcacctaaaacccgcccgcgatgaaacgaaaccgaccctaacccgCTCGTTTTCATCGCAGGACATTTTAGATGAAGATTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51313 True 236 lncRNA 0.52 2 20767034 20767339

Neighbor

gene id symbol gene type direction distance location
LOC111192421 NA coding downstream 908408 19851884 ~ 19858626 (-)
LOC103041897 vstm4,LOC108437315,LOC107720466,LOC107708899,LOC107653934 coding downstream 950853 19802002 ~ 19816181 (-)
LOC103041296 LOC108437306,LOC108274024 coding downstream 986539 19741133 ~ 19780495 (-)
frmpd2 LOC108437313 coding downstream 1058425 19678449 ~ 19708609 (-)
LOC103045380 NA coding downstream 1134706 19627600 ~ 19632328 (-)
cops3 cops3 coding upstream 16590 20783929 ~ 20797947 (-)
rasd1 rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420 coding upstream 99461 20866800 ~ 20869080 (-)
pemt pemt,LOC107719881 coding upstream 109095 20876434 ~ 20968546 (-)
lmf1 lmf1,LOC107580192 coding upstream 214066 20981405 ~ 20990118 (-)
LOC103035258 NA coding upstream 236261 21003600 ~ 21018253 (-)
G38032 NA non-coding downstream 154432 20612275 ~ 20612602 (-)
LOC111192388 NA non-coding downstream 217816 20546125 ~ 20549218 (-)
G38016 NA non-coding downstream 255848 20457704 ~ 20511186 (-)
G37970 NA non-coding downstream 349854 20416871 ~ 20417180 (-)
G37966 NA non-coding downstream 421864 20344882 ~ 20345170 (-)
G38052 nt5m,LOC107719901 non-coding upstream 36716 20804055 ~ 20811142 (-)
G38179 med9,LOC108412951 non-coding upstream 95462 20862801 ~ 20865721 (-)
G38180 NA non-coding upstream 102679 20870018 ~ 20870550 (-)
G38181 NA non-coding upstream 104196 20871535 ~ 20871832 (-)
G38183 NA non-coding upstream 105993 20873332 ~ 20873636 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 87603 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 941382 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 1165750 19544225 ~ 19601284 (-)
G37616 NA other downstream 2131936 18633578 ~ 18635098 (-)
G37603 NA other downstream 2193858 18572691 ~ 18573176 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 1105981 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 1246166 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 2613306 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 2697880 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 2915787 23683126 ~ 23720782 (-)

Expression


Co-expression Network