G38062


Basic Information

Item Value
gene id G38062
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20903077 ~ 20981763 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51331
TGTACGTTCGCCTTCCATTTCTGGGGTCCATGTCATAGAACCACAGTACCACCTGTCAGCAATTAACCTCCAGCAGTaacacccactagatcagttgaaaaaacacaattttggttgagaaccgtACATACATTGTCCTGATATGTTTGGCACAGTGTTTTCTCTTTAGGTAAAACATCACCTTCAGAGTTTTGCATTCACACATCGTCAGAGTAAGCTGAAGTTCTGCCTAAAAGGCTCTTAGGCCGTGTTTCTCTCAGTAAACTCCAGTCCCAGTCTGAGGCACGTTTTCTGATAGTGTGGTCACTGTCGGTCAGGCTGAGGCCAGTTTCTGGACTTAAAGTAGCTCCTGAGGCCTTCCAGGTTGAGTGGAGGGAAATAAGGTCCAATACGTTTTCTGGCCCACCACTTCCCCTGTGCAGCACTGGAGCTACCGGGTCTCGTAAACTTATACCTGTAGTGTTCTCCTCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51331 True 472 lncRNA 0.47 2 20903077 20981763

Neighbor

gene id symbol gene type direction distance location
med9 med9,LOC108412951 coding upstream 37292 20862649 ~ 20865785 (+)
nt5m nt5m,LOC107719901 coding upstream 91935 20800120 ~ 20811142 (+)
tnfrsf13b NA coding upstream 169406 20725051 ~ 20733671 (+)
LOC103031004 LOC103031004,LOC108274330,LOC108437322,LOC107726267,LOC107653975,LOC107693649,LOC107719927 coding upstream 194220 20702260 ~ 20708857 (+)
LOC103030679 LOC108437319 coding upstream 211351 20689666 ~ 20691726 (+)
LOC103033426 NA coding downstream 9218 20990981 ~ 20996657 (+)
emc9 emc9,LOC106579550,LOC106590414 coding downstream 16352 20998115 ~ 21002011 (+)
cep55 NA coding downstream 50139 21031902 ~ 21043890 (+)
pde6c pde6c,LOC107557364,LOC107598595 coding downstream 73805 21055568 ~ 21077901 (+)
slc35g1 si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601 coding downstream 160823 21142586 ~ 21144194 (+)
G38059 NA non-coding upstream 27801 20874796 ~ 20875276 (+)
G38010 cops3 non-coding upstream 112951 20783931 ~ 20790126 (+)
G37972 NA non-coding upstream 357440 20445849 ~ 20545637 (+)
G37974 NA non-coding upstream 391891 20509679 ~ 20511186 (+)
G37969 NA non-coding upstream 485897 20416873 ~ 20417180 (+)
G38081 rbp4 non-coding downstream 62749 21044512 ~ 21083648 (+)
G38093 NA non-coding downstream 149867 21131630 ~ 21139901 (+)
G38101 NA non-coding downstream 290369 21272132 ~ 21272572 (+)
G38106 NA non-coding downstream 335340 21317103 ~ 21317345 (+)
G38099 NA non-coding downstream 340076 21321839 ~ 21322611 (+)
G37943 NA other upstream 744738 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1391636 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 1418162 19481056 ~ 19484915 (+)
G37749 NA other upstream 1571416 19329368 ~ 19331661 (+)
LOC103022762 NA other upstream 2195349 18645635 ~ 18707728 (+)
G38079 kif22,LOC107664627 other downstream 37406 21019169 ~ 21030797 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 127317 21109080 ~ 21128764 (+)
plce1 plce1,LOC107743958 other downstream 184805 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 2765706 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2765808 23747571 ~ 23747643 (+)

Expression


Co-expression Network