G38079 (kif22,LOC107664627)


Basic Information

Item Value
gene id G38079
gene name kif22,LOC107664627
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21019169 ~ 21030797 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51357
tacatgtatccacagtttaaaaagtaaaatgtgtttatttaaaaacaaaaaagccaCACAAgcatcaaaaacacaaaaacagaccAAGTAGTCAGCTCTGGAGCTCCATTACTTCTAttcacagaaagaaaaaaagcataCATGATCACTTCCCCATTGCACTGAGAATGTTGGCCTTAATAAAAGATGAGAAACGCTTCGCTGTAATGCCTTCAATTTTCTTTAAGTCATCCACCTGTGTGAAATCTCCATTAACTTCTCTCCAGCCCAGAATGAGTTTGGCCTTTTTATCACCAATGAGCTGCAGGCTTTTCAGCTCTTTCAGTGATCCAGAGTTCAGCGTGTCAAGGATTTTCTTTTTGGACTGCTCTAGTAGTGAGGAGTCTAGTCGCGACTCCCAGTTCAACTCTCCATCACAGGAGGGCTCCGGACCACTGTTCTCTTTACCCTTTATgacctcctgcagtgtttttttgtccttgctcaatttttcttttgatggTTTCCAAACCACAGCACACTGCTGCAACGGCTGCACATGACTCACCTGTAATGGAATAACAACTGCCTGCTGTTTCCTGGGTTTGGCTGCAGTTGACTGCTTCCTGTTTAAAAGGTTCAGGTCTGACCTGAAGAGAGGGGCACCACCGTCTTTCTCATCCTTCGGTTTATCCTGACCACCCGTAAGTTTATTTAACATGTCTGCCTTCTCTTCCAACTCCTTCTGCTTCTCCTTTGCGGGACTGCGCGACTGTCTTCAGCAAATtgagtctctctttctctggggAGCCCAACATCATTTTCTCCAGAGCCAGAAGCCTGTCCAACACTGACGTATCGGCCGGGCTGTGTGGCTGTGTTTGTGGTGATGGTATTTCCCCTTTTTTATTCTCCTTCAACCTCTTATTCTGTGGTTCTCCTGGTCCCCCAGCCTCCTGCTCTTCTCTTGACCTTTTACCATTTGTGGGAGCCGCCACGGTCTCTCTGACGAACGGTCGGTTGACAATTTGCTTGGACTTGGCAGCGAAATTGAGGGCGGTGAAAGTATCGAAGTAGTACTTGTACTCAGGAGCGATGTTTGTAATCATCACTGAATGGGCGGAGCCACCCAGCGAATCCTGTAGCAGGCGGGTGAGTTTACTGTCTCTGTACGGCACACGGCCCACGGTCCCAGCGTTTAAACTGTCCACCACTTTGCTGAGAGTGAAGAGGGACAGGTTGATGGCACCGCTCTCCTTCAGGCGTATACCCTGATTACCTGTGCGCCGGTTGTCCTCTGAGCCGGCCAGGTCAACTAGGTAGAGTTTCCCAGTCAGCTGTCGATGAGGTGGAACACGCTGAGACTTCACCACCTTAAAGAATAGACAAACGAGTACAACAaggaatcCCCCctctcactagtgatgccccaacaccaggagggtaaagactagcacatgcctcctttagccaccttctctttttgaactgctgctgatgcagcattgccaagtggCATCACAGCgtgttcggaggaaagcgcagcgacttggttccgatacatcagctcacagatgccttgtgttgatcaacatcaccctaggaatgatgagggaaaagagcaccatctacccacccagagagattaaagccaattgtgctccagcagc

Function

symbol description
kif22 Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within several processes, including central nervous system development; somitogenesis; and thigmotaxis. Predicted to be located in cytoplasm; cytoskeleton; and nucleus. Predicted to be part of kinesin complex. Predicted to be active in microtubule. Is expressed in brain. Human ortholog(s) of this gene implicated in spondyloepimetaphyseal dysplasia with joint laxity type 2. Orthologous to human KIF22 (kinesin family member 22).

NR:

description
PREDICTED: kinesin-like protein KIF22 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51357 True 1649 TUCP 0.48 9 21019169 21030797

Neighbor

gene id symbol gene type direction distance location
emc9 emc9,LOC106579550,LOC106590414 coding upstream 17158 20998115 ~ 21002011 (+)
LOC103033426 NA coding upstream 22512 20990981 ~ 20996657 (+)
med9 med9,LOC108412951 coding upstream 153384 20862649 ~ 20865785 (+)
nt5m nt5m,LOC107719901 coding upstream 208027 20800120 ~ 20811142 (+)
tnfrsf13b NA coding upstream 285498 20725051 ~ 20733671 (+)
cep55 NA coding downstream 1105 21031902 ~ 21043890 (+)
pde6c pde6c,LOC107557364,LOC107598595 coding downstream 24771 21055568 ~ 21077901 (+)
slc35g1 si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601 coding downstream 111789 21142586 ~ 21144194 (+)
LOC103044640 NA coding downstream 321394 21352191 ~ 21352892 (+)
ace ace,LOC107653924,LOC107664635 coding downstream 399675 21430472 ~ 21474118 (+)
G38062 NA non-coding upstream 37406 20903077 ~ 20981763 (+)
G38059 NA non-coding upstream 143893 20874796 ~ 20875276 (+)
G38010 cops3 non-coding upstream 229043 20783931 ~ 20790126 (+)
G37972 NA non-coding upstream 473532 20445849 ~ 20545637 (+)
G37974 NA non-coding upstream 507983 20509679 ~ 20511186 (+)
G38081 rbp4 non-coding downstream 13715 21044512 ~ 21083648 (+)
G38093 NA non-coding downstream 100833 21131630 ~ 21139901 (+)
G38101 NA non-coding downstream 241335 21272132 ~ 21272572 (+)
G38106 NA non-coding downstream 286306 21317103 ~ 21317345 (+)
G38099 NA non-coding downstream 291042 21321839 ~ 21322611 (+)
G37943 NA other upstream 860830 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1507728 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 1534254 19481056 ~ 19484915 (+)
G37749 NA other upstream 1687508 19329368 ~ 19331661 (+)
LOC103022762 NA other upstream 2311441 18645635 ~ 18707728 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 78283 21109080 ~ 21128764 (+)
plce1 plce1,LOC107743958 other downstream 135771 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 2716672 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2716774 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 2716876 23747673 ~ 23747745 (+)

Expression


Co-expression Network