lgi1 (lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938)


Basic Information

Item Value
gene id lgi1
gene name lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21109080 ~ 21128764 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51377
gaattaaacattgtatttttgttgtaaatTCAATATTTGGAAAATtagaaaactgaataaaaAGAGGAGTTATTGAAGCTGTCAGTCAGAACTACATGCATTACCTTGTCTGCATATGATGCTTCCAGATGACTGCCTCTCTAGAAACATCCTTTGTGTCCATCTCTGTTGTCACCATGCGTTTAGCACTTTTCCTCTTTTTACACCCTCCCTCTAAACAAAAGCCATTGTTCACGCGTTCTCACACAGGCTAGTGGAGTGTTGACAGAAGAGGTATAATAAagaagtgaaaaaaacacagcttgagtgattaactgtgattaactacTTAGTAACAGGTtgccaaataaaatgtttacatttttactctAATCCTAAGAAAATAGGCCTCTAACTTTTATACATAAAGGGATCATCCTCTTGGCAAGGTTTCTCACACTGGGCTAGATTTATCCTAGATTTAAAGGAAAACGGGAGTTTGGGTTTTGTATAGCATTTTAGTAGGTAAATTCTAATGCAATAAATGTAGAATAATAGTATATTGTGTTTGTAATTTTAGAAATACAGTTTAAGTTGTTTAATTGTTACTTGTTGTTTGTCGTAGATGTGCTAATAAAC
>XM_022669334.1
TAAAATGAAACGAAAGTAGATTCTAGTAATTCCTTtgctatttttattctattcgcTTCAAACGTCTGTGAAAACCTTAGAGATTGGGGTGTTTTAGGttgacctggcaaccctgaccCCGTCTggtttcagtgtgtgtgggtgggtgtgtgtgtgtgtgtatgtgtgtgattgagagttCGGCACTGGGCTGCATCCCACCCCCAGCCCCACACCGGCCTGACCCCGCTCTCTGCGCTGCGCTGCGCTGTCTGAGAGCCCGGATCCGGACCCGGACTTcaggatgctgctgctgctcggcTCTGCTCGCCCGTGCccggctctgctgctgctgctgctgctgctcgccTCCAGCGCGCGGATCTCCGAGAGCCGCAGAGGTAAACAGCCGCGCTGCCCGCAGGGATGCACCTGCACCAAAGATAACGCGCTGTGCGAAAACCTCAGATCCGTCCCGCACAGCTTCCCTCCAGACGTCGTCTCCCTaTCATTTGTGAAGTCTGGATTCAGTCAAATCACATCGGGAAGCTTCTTACACACGCCGTCCCTCCAGCTTCTCCTGTTTACAGCCAACTCTTTTGACTCTATTGATGAAGATGCATTCCAGGGTCTACCACATCTGGAATATCTGTTCATTGAAAACAACAAAATCGAGTCAATCTCACCTCAGGCCTTTAGAGGTTTGAAATCTCTCCTACACCTGAGCCTCGCCTATAATAATCTAGAGACATTACCCAAAGATGTTTTTATGGGGATGGATGCCTTAACAAAAGTGGATCTTCGAGGAAACATGTTTAACTGTGACTGTAAGCTGAAATGGCTGGTGGAATGGATGTTTAACACGAATGCAACAGTGGACCAGATGTACTGCAGTGGGCCTCCAGTTTACCAGGGGAAGAAGATCAATGATCTGATGCCTCAGTCATTTGACTGTATATCCACAGAGTTTGCCTCCATGAAGTCACTCAAGTTTGAATCCATTTCTGTGGAGGCCTTCACCTTTGGAAATGATCAGTACGCAGTGTTTGCTCAGCCCTTTGCTGGAACATGCAGCTTCATGGAATGGGACCATGTTAATCTGGAGTTCAGAGCTTACGACACCATAGAGAGCACGTCCACAGTGGTCTGCAAACCAATGGTAATCGAAAACCAGCTCTTTATCGTCGTTGCCCAGCTTTTCGGAGGTTCACACATCTACAAGCGAGACGTCTCAGCCAACAAATTCATCAAGATCCAGGACATTGACATCCTGAAGATTCGGAAGCCGAACGACATTGAGGTGTTCCGGGTGGATGGCAAGTCGTTCTTCGTGATTGCAGACAGCTCCAAGGCAGGGTCCACCACTTTATACAAGTGGAACGGGAACGGCTTCTACTCCCATCAGTCTCTGCACCCCTGGTACCGTGACACAGACGTAGAGTACCTCGATATTGAAGGCAAGCCTCATCTGATTCTCTCCAGCAGCTCACAGCGTCCCGTCGTCTACCAGTGGAGTAAGGCCCAGAAGCAGTTTGACAGACGGACGGATATTCCAGAGATGGAGGACGTCTACGCTGTCAAACACTTTAAGGCCAAAAACGAGCTCTACATCTGCCTGACCCGCTTCATTGGTGACTCCAAGGTGATGCGATGGAATGGCGGCATCTTCACTGAAGTCCAAGCCATGCCTTCTCGAGGCTCTATGGTCTTTCAGCCTATCACCATTGGCAACTGGCAGTACGCCATCCTGGGCAGTGATTACTCTCTCACCCAGGTGTACCAGTGGGACCCCAAGAAGAACCACTTTGTACACTTCCAGGAGATGAACATTCAGGCACCCAGATCTTTCTCTTTGGTGTCCATTGACAACCGAGAGTTCCTGCTGGCCTCCAGCTTCAAAGGGAAGACTCAAATTTATGAGCATTTAATGATCGATCTAAGTAATTAAAGTTTGGTACGTGAAGAACGGGCAACATGTTTTTGATGGCGCTAGGCAACTTAAACCGTTACTTTTCCCACAGTCCCTTTTTGGACTTGATTTAACTTAGATAGATATTTATCAGGATTTCTTTTTAAACTACTTTCTTCTTCAGTTTCCCCAAACATGGAGcaagtttgtggacaccccttctaatgaatgcatttaggttctttaagttgcacccattgctgttACTTTTGTAAGCAATTGGCAGCATGCTTACAAATAACCCCCCAAACTCCATTATTGAGCTGTGCAGCAGTGaaaagaactgtgttctctggaatgatggttctCCATCCATTACTTTTGGGATCTGAGGTGGGTTTATGATCATTTACATTTAGAATATTTAGTAGACGCTTTGAtaattattttgaaattatttgtatctagtttgtagagactagaATCAGAAAGTTACACCAAGCTTTGATAATGTTGAGACACCAAGGAGAACAGtgttagtttaggaactctttaaaaagatgaaaaagatgagtcttcagtcTGCGTTTAAAGACAGTGAGGGATTGTGGGTCGAGCTGAGCTATACTAGAAGTTGGAAGAGCTGTTGGTGCAGATGTTGttttgaccattgccatcaaACTGGCTTTGTAGGCCAGCATCAGGTCTAACATCCTGTCCTCACTAATGCTTGTGCCACTAAATGCAATCAGATTCTTACAGCAATGTTACAAATCTAGAACAAAaaaagccttccctggacagtagagaaagTTACTCCAGCAGAGGAGTACAGTGATTGATtcggtgtcccaatacttttgtcacagtacagtacattatgATGTATATAACTGCAATACCATGCAGTTGATACACTTACAGAATgccttacatttacattttgcaAGAAAGTATGTGTGTGGGGCCTTCTGCGTTGAATATGAAGATGGTTTCTGCCACAAtcgcttgtgatcatccaacatcctgacataTTGGATCCTCTAATGCTCTTGCAGTTGAATGCAAACAAATCCTCACAACagaagacagtagagacagttactctggCAAAGGCAGgatgatctcttttttttaatgccctTGATTTCAGGAGAAATTGTGAATTAGCAGGTGTCGCAATATTTTTGTCCAAATAGTGTAGATACTTACTGTAGCCTACATCATGATGATTTATGGACATGATGCTCGTTTTATAGTGTAATgctatagattatagattatagattttTAGAATTTAGATTAAGAGtgataaatattgtaattacaACATGCCTaaaaatacactgtatataaatctCAACAATAATCTGGAGCAATCATTTGCATATTGCAGTCTTCTGCAATATCAATACTGCAGAAGCCAGTATCGCAAtaactatgtatatatatacagcaccagtcaaaggtttggacataccttgtttattttaaaatgttctgcattgtagattaatactaaagtcaccaaaactatgaagaaacacatataaaattatttagtaatcaATAAAGTGGTAtacaaagcagaatatgttttatattttagattttacaaAGTCACAGTAGCTCTCTTGAGTAGAttaacagttttgcacatcttggctggattttctcagtcagctttatgaggtagagtcacctggaattcaggctttcagttaacagctgtgctgaactcgtcaagatttaattacttgaatttcttacctcttaatgtgtttgagagcatcacttATAAGGTTGTGAAgaagtagagttggtatacagtgaatagctctatttgagtaatattctaatcacTAATCAAACTTTAAGAATTGAAggcagtcaatctgaaaaaaaaaagaaaaacaagaaagttgaaagtatcctcaagtgcagttgcaaagaccatcaaaaacattatggtgaaactggcactcatcaggaccgccccaggagaGGACAAGCAGgagttatctctgttgcacaggataagttctgatgaacttatacgcgttaccagcttcagaaaccagaAACCCAAAAAAGTTAACAGaaacccagataagagcacctaaatacttcacagagtattttggtttgtttgacacttttaagttactacatgattccttatgtgttccttcatagtttttatcacttcagtattaatttactgtatataaagatgatATGCTCCACAGCTCTATTTGCTATATCAAGacatttacagtgtatttaatattttcccAGAACCTGTTTGCTACTGAGGTCaagtacagtttatttttgttacatgtACTGTGATACGGGTTAACCCAGTAAGCCAGCAAGTGAAGTATCTCTATTTCCATGTAAAGAAATAGGGAGGGCTGTAAATCCACACCAAGAAAACAAATGTGTCAGACGGATCTTTGGCCAGTGTTAACAAAAGCAGTTTCCCCATGCAAGCTTATGACCTAGCTGACCCATATATCCCCGTTTCGTTGTTCACATCAACACGTActcctgaagtgtgtgtgtgaactgaaTAAACAGAGGAACAGAGGAGTTATTGAAGCTGTCAGTCAGAACTACATGCATTACCTTGTCTGCATATGATGCTTCCAGATGACTGCCTCTCTAGAAACATCCTTTGTGTCCATCTCTGTTGTCACCATGCGTTTAGCACTTTTCCTCTTTTTACACCCTCCCTCTAAACAAAAGCCATTGTTCACGCGTTCTCACACAGGCTAGTGGAGTGTTGACAGAAGAGGTATAATAAagaagtgaaaaaaacacagcttgagtgattaactgtgattaactacTTAGTAACAGGTtgccaaataaaatgtttacatttttactctAATCCTAAGAAAATAGGCCTCTAACTTTTATACATAAAGGGATCATCCTCTTGGCAAGGTTTCTCACACTGGGCTAGATTTATCCTAGATTTAAAGGAAAACGGGAGTTTGGGTTTTGTATAGCATTTTAGTAGGTAAATTCTAATGCAATAAATGTAGAATAATAGTATATTGTGTTTGTAATTTTAGAAATACAGTTTAAGTTGTTTAATTGTTACTTGTTGTTTGTCGTAGATGTGCTAATAAACCAATTTCACACCCTTGTAGGCTA

Function

symbol description
lgi1b Acts upstream of or within brain morphogenesis and myelination. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; eye; head mesenchyme; heart; and skeletal muscle. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-1; childhood absence epilepsy; and familial temporal lobe epilepsy 1. Orthologous to several human genes including LGI1 (leucine rich glioma inactivated 1).
lgi1 Enables signaling receptor binding activity. Involved in axon guidance and positive regulation of cell growth. Located in extracellular space. Implicated in familial temporal lobe epilepsy 1.

NR:

description
PREDICTED: leucine-rich glioma-inactivated protein 1

GO:

id name namespace
GO:0048854 brain morphogenesis biological_process

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU51377 False 618 lncRNA 0.34 2 21118229 21128741
XM_022669334.1 True 5056 mRNA 0.42 8 21109080 21128764

Neighbor

gene id symbol gene type direction distance location
pde6c pde6c,LOC107557364,LOC107598595 coding upstream 31179 21055568 ~ 21077901 (+)
cep55 NA coding upstream 65190 21031902 ~ 21043890 (+)
emc9 emc9,LOC106579550,LOC106590414 coding upstream 107069 20998115 ~ 21002011 (+)
LOC103033426 NA coding upstream 112423 20990981 ~ 20996657 (+)
med9 med9,LOC108412951 coding upstream 243295 20862649 ~ 20865785 (+)
slc35g1 si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601 coding downstream 13822 21142586 ~ 21144194 (+)
LOC103044640 NA coding downstream 223427 21352191 ~ 21352892 (+)
ace ace,LOC107653924,LOC107664635 coding downstream 301708 21430472 ~ 21474118 (+)
dlx3 dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903 coding downstream 496837 21625601 ~ 21629176 (+)
LOC111192390 NA coding downstream 695615 21824379 ~ 21828127 (+)
G38081 rbp4 non-coding upstream 25432 21044512 ~ 21083648 (+)
G38062 NA non-coding upstream 127317 20903077 ~ 20981763 (+)
G38059 NA non-coding upstream 233804 20874796 ~ 20875276 (+)
G38010 cops3 non-coding upstream 318954 20783931 ~ 20790126 (+)
G37972 NA non-coding upstream 563443 20445849 ~ 20545637 (+)
G38093 NA non-coding downstream 2866 21131630 ~ 21139901 (+)
G38101 NA non-coding downstream 143368 21272132 ~ 21272572 (+)
G38106 NA non-coding downstream 188339 21317103 ~ 21317345 (+)
G38099 NA non-coding downstream 193075 21321839 ~ 21322611 (+)
G38117 NA non-coding downstream 230375 21359139 ~ 21359560 (+)
G38079 kif22,LOC107664627 other upstream 78283 21019169 ~ 21030797 (+)
G37943 NA other upstream 950741 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1597639 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 1624165 19481056 ~ 19484915 (+)
G37749 NA other upstream 1777419 19329368 ~ 19331661 (+)
plce1 plce1,LOC107743958 other downstream 37804 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 2618705 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2618807 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 2618909 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 2619011 23747775 ~ 23747847 (+)

Expression


Co-expression Network