G38093


Basic Information

Item Value
gene id G38093
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21131630 ~ 21139901 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51380
CGGCGCTGCGGGGACTCGGTGAGCGCTGCTCGGCTCCAAGGTTAATCATTCACCCCGCGAGCCGCCGCGCTAGATAAGTTACTCCTCAGGGGCCGGCGCGCGGAGCGGTACTTTCATCAAGagaggaggaggatgaggacgTGGCGACCGTGGTGTTGGTTCGCCGAGCCGGGGAGGAGGAGGGCTCTGGAGCGGCCGGGCGGCCCCGGGAGGACGGATGGGAGGACGGGGCTCGACTCCCAAAAAACTCGCGGCCTACCGGCGTCCCCGGGCGGCTGCTCTCGGCCGTGTGTCGCAGCTGCCGGGGAGCAGGACCGGAGCGCACGGGGCGGCCAGCAGcggaaataacaacaacaacagACCTCTTGTTGTGGTCAGTCCGAGAGATGTTGACACAATTTGGCCCTTTTCAAATCTTGGCATCCTCATGACCTTGGGGATACCGAGCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51380 True 450 lncRNA 0.65 3 21131630 21139901

Neighbor

gene id symbol gene type direction distance location
pde6c pde6c,LOC107557364,LOC107598595 coding upstream 53729 21055568 ~ 21077901 (+)
cep55 NA coding upstream 87740 21031902 ~ 21043890 (+)
emc9 emc9,LOC106579550,LOC106590414 coding upstream 129619 20998115 ~ 21002011 (+)
LOC103033426 NA coding upstream 134973 20990981 ~ 20996657 (+)
med9 med9,LOC108412951 coding upstream 265845 20862649 ~ 20865785 (+)
slc35g1 si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601 coding downstream 2685 21142586 ~ 21144194 (+)
LOC103044640 NA coding downstream 212290 21352191 ~ 21352892 (+)
ace ace,LOC107653924,LOC107664635 coding downstream 290571 21430472 ~ 21474118 (+)
dlx3 dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903 coding downstream 485700 21625601 ~ 21629176 (+)
LOC111192390 NA coding downstream 684478 21824379 ~ 21828127 (+)
G38081 rbp4 non-coding upstream 47982 21044512 ~ 21083648 (+)
G38062 NA non-coding upstream 149867 20903077 ~ 20981763 (+)
G38059 NA non-coding upstream 256354 20874796 ~ 20875276 (+)
G38010 cops3 non-coding upstream 341504 20783931 ~ 20790126 (+)
G37972 NA non-coding upstream 585993 20445849 ~ 20545637 (+)
G38101 NA non-coding downstream 132231 21272132 ~ 21272572 (+)
G38106 NA non-coding downstream 177202 21317103 ~ 21317345 (+)
G38099 NA non-coding downstream 181938 21321839 ~ 21322611 (+)
G38117 NA non-coding downstream 219238 21359139 ~ 21359560 (+)
G38120 LOC102799035,LOC103365053 non-coding downstream 224460 21364361 ~ 21369269 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 2866 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 100833 21019169 ~ 21030797 (+)
G37943 NA other upstream 973291 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1620189 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 1646715 19481056 ~ 19484915 (+)
plce1 plce1,LOC107743958 other downstream 26667 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 2607568 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2607670 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 2607772 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 2607874 23747775 ~ 23747847 (+)

Expression


Co-expression Network