G38099


Basic Information

Item Value
gene id G38099
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21321839 ~ 21322611 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51387
TCCATTCtccaatttatttacatatgcTCTACATTAGTGGTATTTCATCAAATATTTACAATTTCTTCTTATCGTCCAGTATGAAAACTGTACAATAAAAGTGATGGAGTGAGTAAAAAAGTTGAGTTTCAGTACACAGGCCTGCTTTTTCACAACGACTCATTACAGATACAGATGCAGTTCAGAACAGAGAGAGTTCAATATCTCAGAGTTAAACTCACAGAAACACGGGTTTTTGTATTTGGTCAAATATTAAAGCAAAAACACAACCATACATATGATACAACATAATTTCACTGTAACACACCAGAGTTACACCAGAGAAATCACTTTAAAACCAATTCAGCTGTAGTAGTGTTCTTAACCATGTTTGAAAAAGTAGATTTGCAGTgtatccaaataaaaaattctaaattcatcataacacataaaaaaagaatgcacTGAATTTCAACAATAAACCACAGATTTCAATACTACAACAGATCAGCAGTTCAGTCTCTGACTATACCTGCACTGATGTAAAAGTGTAACATGAGGGAAGAACCTCCTCTGGATTAGATAACGGGTCTTCCTCTTTAATTTCTCTCCTGAGGAAAAGATGGGGCCAAACATAATCTCTATTACTGCAGTTTTTCTAGTTTAGTGTCTtgattatagaactataaatgCATATGTATAGCACCATAGATACAATTAAAAGATGAAGTTTtgcaattaataaatacatacattatattattttttatttacttcatatttaACCCTTAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51387 True 773 lncRNA 0.32 1 21321839 21322611

Neighbor

gene id symbol gene type direction distance location
slc35g1 si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601 coding upstream 177645 21142586 ~ 21144194 (+)
pde6c pde6c,LOC107557364,LOC107598595 coding upstream 243938 21055568 ~ 21077901 (+)
cep55 NA coding upstream 277949 21031902 ~ 21043890 (+)
emc9 emc9,LOC106579550,LOC106590414 coding upstream 319828 20998115 ~ 21002011 (+)
LOC103033426 NA coding upstream 325182 20990981 ~ 20996657 (+)
LOC103044640 NA coding downstream 29580 21352191 ~ 21352892 (+)
ace ace,LOC107653924,LOC107664635 coding downstream 107861 21430472 ~ 21474118 (+)
dlx3 dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903 coding downstream 302990 21625601 ~ 21629176 (+)
LOC111192390 NA coding downstream 501768 21824379 ~ 21828127 (+)
ptges3l ptges3l,si:ch211-131k2.3,LOC107653952 coding downstream 521354 21843965 ~ 21850981 (+)
G38106 NA non-coding upstream 4494 21317103 ~ 21317345 (+)
G38101 NA non-coding upstream 49267 21272132 ~ 21272572 (+)
G38093 NA non-coding upstream 181938 21131630 ~ 21139901 (+)
G38081 rbp4 non-coding upstream 238191 21044512 ~ 21083648 (+)
G38062 NA non-coding upstream 340076 20903077 ~ 20981763 (+)
G38117 NA non-coding downstream 36528 21359139 ~ 21359560 (+)
G38120 LOC102799035,LOC103365053 non-coding downstream 41750 21364361 ~ 21369269 (+)
G38152 NA non-coding downstream 252251 21574862 ~ 21620560 (+)
G38155 NA non-coding downstream 260847 21583458 ~ 21608327 (+)
G38169 NA non-coding downstream 364272 21686883 ~ 21693765 (+)
plce1 plce1,LOC107743958 other upstream 25016 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 193075 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 291042 21019169 ~ 21030797 (+)
G37943 NA other upstream 1163500 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1810398 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 2424858 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2424960 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 2425062 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 2425164 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 2425266 23747877 ~ 23747949 (+)

Expression


Co-expression Network