G38106


Basic Information

Item Value
gene id G38106
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21317103 ~ 21317345 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51397
agggctggcccgaatagcgttttttgagctccggatattcggcactgattcgaagcgaatattcgaatattcgtttttaaaaaaagaggtaaaaaaaagcaaatcacggcccctttaatccactgaaaaatgttcaatttgctctgaccgacgagacatattcaccccggatttttggtgtttttatcccccatattttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51397 True 200 lncRNA 0.40 2 21317103 21317345

Neighbor

gene id symbol gene type direction distance location
slc35g1 si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601 coding upstream 172909 21142586 ~ 21144194 (+)
pde6c pde6c,LOC107557364,LOC107598595 coding upstream 239202 21055568 ~ 21077901 (+)
cep55 NA coding upstream 273213 21031902 ~ 21043890 (+)
emc9 emc9,LOC106579550,LOC106590414 coding upstream 315092 20998115 ~ 21002011 (+)
LOC103033426 NA coding upstream 320446 20990981 ~ 20996657 (+)
LOC103044640 NA coding downstream 34846 21352191 ~ 21352892 (+)
ace ace,LOC107653924,LOC107664635 coding downstream 113127 21430472 ~ 21474118 (+)
dlx3 dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903 coding downstream 308256 21625601 ~ 21629176 (+)
LOC111192390 NA coding downstream 507034 21824379 ~ 21828127 (+)
ptges3l ptges3l,si:ch211-131k2.3,LOC107653952 coding downstream 526620 21843965 ~ 21850981 (+)
G38101 NA non-coding upstream 44531 21272132 ~ 21272572 (+)
G38093 NA non-coding upstream 177202 21131630 ~ 21139901 (+)
G38081 rbp4 non-coding upstream 233455 21044512 ~ 21083648 (+)
G38062 NA non-coding upstream 335340 20903077 ~ 20981763 (+)
G38059 NA non-coding upstream 441827 20874796 ~ 20875276 (+)
G38099 NA non-coding downstream 4494 21321839 ~ 21322611 (+)
G38117 NA non-coding downstream 41794 21359139 ~ 21359560 (+)
G38120 LOC102799035,LOC103365053 non-coding downstream 47016 21364361 ~ 21369269 (+)
G38152 NA non-coding downstream 257517 21574862 ~ 21620560 (+)
G38155 NA non-coding downstream 266113 21583458 ~ 21608327 (+)
plce1 plce1,LOC107743958 other upstream 20280 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 188339 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 286306 21019169 ~ 21030797 (+)
G37943 NA other upstream 1158764 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1805662 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 2430124 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2430226 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 2430328 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 2430430 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 2430532 23747877 ~ 23747949 (+)

Expression


Co-expression Network