G38117


Basic Information

Item Value
gene id G38117
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21359139 ~ 21359560 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51413
ttttttttttatataattttatttctaatttttcccattttctccccaatttacacagccaattacccaacccattcattaggactcccccatcactagtgatacctcaacacaccaggagggtgaagactaacacatgcttcctccgatacatgtgaagtcagccaccgcttcttttcgagctgctgccgatgcagcattgccgagcagccagcgcacttggaggaaagcacagcataggagtgatgtggggaaagagcgccatctacccacccagagggagcagggccaattttgctccctctaacgccggcagcttgatggcaaagctgcatgagctggggttcgaaccggcgacctcctgctcata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51413 True 370 lncRNA 0.50 2 21359139 21359560

Neighbor

gene id symbol gene type direction distance location
LOC103044640 NA coding upstream 6247 21352191 ~ 21352892 (+)
slc35g1 si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601 coding upstream 214945 21142586 ~ 21144194 (+)
pde6c pde6c,LOC107557364,LOC107598595 coding upstream 281238 21055568 ~ 21077901 (+)
cep55 NA coding upstream 315249 21031902 ~ 21043890 (+)
emc9 emc9,LOC106579550,LOC106590414 coding upstream 357128 20998115 ~ 21002011 (+)
ace ace,LOC107653924,LOC107664635 coding downstream 70912 21430472 ~ 21474118 (+)
dlx3 dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903 coding downstream 266041 21625601 ~ 21629176 (+)
LOC111192390 NA coding downstream 464819 21824379 ~ 21828127 (+)
ptges3l ptges3l,si:ch211-131k2.3,LOC107653952 coding downstream 484405 21843965 ~ 21850981 (+)
g6pc g6pc,g6pca.2,LOC106579337 coding downstream 513752 21873312 ~ 21878213 (+)
G38099 NA non-coding upstream 36528 21321839 ~ 21322611 (+)
G38106 NA non-coding upstream 41794 21317103 ~ 21317345 (+)
G38101 NA non-coding upstream 86567 21272132 ~ 21272572 (+)
G38093 NA non-coding upstream 219238 21131630 ~ 21139901 (+)
G38081 rbp4 non-coding upstream 275491 21044512 ~ 21083648 (+)
G38120 LOC102799035,LOC103365053 non-coding downstream 4801 21364361 ~ 21369269 (+)
G38152 NA non-coding downstream 215302 21574862 ~ 21620560 (+)
G38155 NA non-coding downstream 223898 21583458 ~ 21608327 (+)
G38169 NA non-coding downstream 327323 21686883 ~ 21693765 (+)
G38301 NA non-coding downstream 419098 21778658 ~ 21779093 (+)
plce1 plce1,LOC107743958 other upstream 62316 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 230375 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 328342 21019169 ~ 21030797 (+)
G37943 NA other upstream 1200800 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1847698 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 2387909 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2388011 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 2388113 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 2388215 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 2388317 23747877 ~ 23747949 (+)

Expression


Co-expression Network