G38175


Basic Information

Item Value
gene id G38175
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20874665 ~ 20875517 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51479
aactgattgtaaaccattaataaaccctttataaaggtagtcttattttaaagtggtaccaacaaTCTAACTTCGACCAAAACCTTAAACTAACCTTCAAATCCAACCATAAACCCAGTCcttaaatgttaagattagagtttggattagagtttggattagagttgggtgtagggttacattcaatacagAATCCTTTTCTTTCACTTTAGAGTTCAGTTGAATTTAAGATGTTAATTGAGTGTGTTCTGTATGAGGCCTCTACAATGGACCAtacaagtaaagtgttaccaaacttttataaacaatattatgGTTTAGTCCAACAGCTGTGATTTATAATTCTTAATATCTTAATTCCTAAGATATGAGGATGATGGTTTACATGAACTACTGTTAAAGGCTTTTGTTGTTTTGAACAGATACACTCTGCACGTTCTTGAGTTCTTCAGTGAAGAGCTTCTGTTCTGACGTTTCTGTTCTAGAGTCTGGGGGTTTAGTTTAGATAGTGATGTTctttatttacaaattaaatccAATAGAATTGTTCTGAAAccactgtatttattaaacttgacacagaacaataaatacattttatttgctgATGT
>TU51480
acgtagaaaaagcaataatgacctgttgtttgtaaaatactgaacccacagccatctatactgttgccctttctacgtatgtgttataactgattattaatgatttttaaggcatttacaacctaattagtaaccattaataaactgattgtaaaccattaataaaccctttataaaggtagtcttattttaaagtggtaccaacaaTCTAACTTCGACCAAAACCTTAAACTAACCTTCAAATCCAACCATAAACCCAGTCcttaaatgttaagattagagtttggattagagtttggattagagttgggtgtagggttacattcaatacagAATCCTTTTCTTTCACTTTAGAGTTCAGTTGAATTTAAGATGTTAATTGAGTGTGTTCTGTATGAGGCCTCTACAATGGACCAtacaagtaaagtgttaccaaacttttataaacaatattatgGTTTAGTCCAACAGCTGTGATTTATAATTCTTAATATCTTAATTCCTAAGATATGAGGATGATGGTTTACATGAACTACTGTTAAAGGCTTTTGTTGTTTTGAACAGATACACTCTGCACGTTCTTGAGTTCTTCAGTGAAGAGCTTCTGTTCTGACGTTTCTGTTCTAGAGTCTGGGGGTTTAGTTTAGATAGTGATGTTctttatttacaaattaaatccAATAGAATTGTTCTGAAAccactgtatttattaaacttgacacagaacaataaatacattttatttgctgATGT
>TU51481
aactgattgtaaaccattaataaaccctttataaaggtagtcttattttaaagtggtaccaacaaTCTAACTTCGACCAAAACCTTAAACTAACCTTCAAATCCAACCATAAACCCAGTCcttaaatgttaagattagagtttggattagagtttggattagagttgggtgtagggttacattcaatacagAATCCTTTTCTTTCACTTTAGAGTTCAGTTGAATTTAAGATGTTAATTGAGTGTGTTCTGTATGAGGCCTCTACAATGGACCAtacaagtaaagtgttaccaaacttttataaacaatattatgGTTTAGTCCAACAGCTGTGATTTATAATTCTTAATATCTTAATTCCTAAGATATGAGGATGATGGTTTACATGAACTACTGTTAAAGGCTTTTGTTGTTTTGAACAGATACACTCTGCACGTTCTTGAGTTCTTCAGTGAAGAGCTTCTGTTCTGACGTTTCTGTTCTAGAGTCTGGGGGTTTAGTTTAGATAGTGATGTTctttatttacaaattaaatccAATAGAATTGTTCTGAAAccactgtatttattaaacttgacacagaacaataaatacattttatttgctgATGTTTTAATTGCTGGCTTGTTTTAATTGCTTGTTTTACCTTACAGGAGATGCATGAAGAATGGTCTGGATCATAGGATTTCttggcagtccgtattatttagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51479 False 611 lncRNA 0.32 1 20874765 20875375
TU51480 True 753 lncRNA 0.32 1 20874765 20875517
TU51481 False 711 lncRNA 0.33 1 20874665 20875375

Neighbor

gene id symbol gene type direction distance location
rasd1 rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420 coding downstream 5585 20866800 ~ 20869080 (-)
cops3 cops3 coding downstream 76718 20783929 ~ 20797947 (-)
LOC103037418 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding downstream 93336 20735303 ~ 20781329 (-)
LOC111192421 NA coding downstream 1016039 19851884 ~ 19858626 (-)
LOC103041897 vstm4,LOC108437315,LOC107720466,LOC107708899,LOC107653934 coding downstream 1058484 19802002 ~ 19816181 (-)
pemt pemt,LOC107719881 coding upstream 917 20876434 ~ 20968546 (-)
lmf1 lmf1,LOC107580192 coding upstream 105888 20981405 ~ 20990118 (-)
LOC103035258 NA coding upstream 128083 21003600 ~ 21018253 (-)
kif22 kif22,LOC107664627,LOC107654032 coding upstream 143604 21019121 ~ 21030167 (-)
rbp4 rbp4 coding upstream 168984 21044501 ~ 21048013 (-)
G38183 NA non-coding downstream 1029 20873332 ~ 20873636 (-)
G38181 NA non-coding downstream 2833 20871535 ~ 20871832 (-)
G38180 NA non-coding downstream 4115 20870018 ~ 20870550 (-)
G38179 med9,LOC108412951 non-coding downstream 8944 20862801 ~ 20865721 (-)
G38052 nt5m,LOC107719901 non-coding downstream 63523 20804055 ~ 20811142 (-)
G38200 NA non-coding upstream 122580 20998097 ~ 20999626 (-)
G38205 NA non-coding upstream 156406 21031923 ~ 21035047 (-)
G38204 NA non-coding upstream 167933 21043450 ~ 21043889 (-)
G38222 NA non-coding upstream 265202 21140719 ~ 21141112 (-)
G38239 plce1 non-coding upstream 389420 21264937 ~ 21279439 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 195234 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 1049013 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 1273381 19544225 ~ 19601284 (-)
G37616 NA other downstream 2239567 18633578 ~ 18635098 (-)
G37603 NA other downstream 2301489 18572691 ~ 18573176 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 997803 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 1137988 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 2505128 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 2589702 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 2807609 23683126 ~ 23720782 (-)

Expression


Co-expression Network