G38179 (med9,LOC108412951)


Basic Information

Item Value
gene id G38179
gene name med9,LOC108412951
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20862801 ~ 20865721 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51485
aaaataaaaataaaaaataatctaacagCAACTAAAGCACAGTCAAAATCAGTAAAGTCACACGAATGATGGGGAAAAGCACAGTCCCTTGTGTGGAACAGTTCTTTTTCAGATGAGTTTGTCTGTCAATAAATAATCCATCTGTCCTTATTTACTCTGTAGAATCCTCTGATCCTCTTCCTCAGGAAGGCTTGGGGATGTCAAACATACACAGGCCCTTGTACTTGTGTAAGAGCTGGTTCTTGGTACGAACCTGATCCCTAAGCGTTTGCAGACGCTGCTGCTGTGCTGATGGACTCGCATCAATGCCAGGCATAGCTGAAATCTGCTCCCGTGCCTCCTGAATCCGTGCTCTCAGTCTGTTTAACTCCTGGTGAACATCCTGGTTCTCTTTGTCCATGCATTTGATAATATCGTGAATTAGAGGTAAAAAGGAGTAATCCTCCGTCTCCTCCACCACAGCCACAGCGCTCGCCATCTTCAGCTGACTGTCCTCTGACATCACAGTCCTCTGAC

Function

symbol description
med9 Predicted to enable transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex.

NR:

description
mediator of RNA polymerase II transcription subunit 9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51485 True 516 lncRNA 0.45 2 20862801 20865721

Neighbor

gene id symbol gene type direction distance location
cops3 cops3 coding downstream 64854 20783929 ~ 20797947 (-)
LOC103037418 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding downstream 81472 20735303 ~ 20781329 (-)
LOC111192421 NA coding downstream 1004175 19851884 ~ 19858626 (-)
LOC103041897 vstm4,LOC108437315,LOC107720466,LOC107708899,LOC107653934 coding downstream 1046620 19802002 ~ 19816181 (-)
LOC103041296 LOC108437306,LOC108274024 coding downstream 1082306 19741133 ~ 19780495 (-)
rasd1 rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420 coding upstream 1079 20866800 ~ 20869080 (-)
pemt pemt,LOC107719881 coding upstream 10713 20876434 ~ 20968546 (-)
lmf1 lmf1,LOC107580192 coding upstream 115684 20981405 ~ 20990118 (-)
LOC103035258 NA coding upstream 137879 21003600 ~ 21018253 (-)
kif22 kif22,LOC107664627,LOC107654032 coding upstream 153400 21019121 ~ 21030167 (-)
G38052 nt5m,LOC107719901 non-coding downstream 51659 20804055 ~ 20811142 (-)
G38048 NA non-coding downstream 95462 20767034 ~ 20767339 (-)
G38032 NA non-coding downstream 250199 20612275 ~ 20612602 (-)
LOC111192388 NA non-coding downstream 313583 20546125 ~ 20549218 (-)
G38016 NA non-coding downstream 351615 20457704 ~ 20511186 (-)
G38180 NA non-coding upstream 4297 20870018 ~ 20870550 (-)
G38181 NA non-coding upstream 5814 20871535 ~ 20871832 (-)
G38183 NA non-coding upstream 7611 20873332 ~ 20873636 (-)
G38175 NA non-coding upstream 8944 20874665 ~ 20875517 (-)
G38200 NA non-coding upstream 132376 20998097 ~ 20999626 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 183370 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 1037149 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 1261517 19544225 ~ 19601284 (-)
G37616 NA other downstream 2227703 18633578 ~ 18635098 (-)
G37603 NA other downstream 2289625 18572691 ~ 18573176 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 1007599 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 1147784 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 2514924 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 2599498 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 2817405 23683126 ~ 23720782 (-)

Expression


Co-expression Network