G38200


Basic Information

Item Value
gene id G38200
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20998097 ~ 20999626 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51510
gttaagtgcaaaaatacatgagaaaaaagaaaacgcaTGATGTCGATTGTAATGAACACAGTCTAAAAAGGTTAAAGAGGAAATCTTTACATTTtgtagaaatgttaaatgtttttagtgTAATGCacccttgtttttttatgtaaaactcaTTTGGATATATTGTGGTACCTGAGTAAGCGCTAGCTGTGTCGTGAGAGCCAGCGATAAATGGGAGTGAAGTAGAGGAACACAGTCTGTAACACACACAGGGCCCTCAGATGAACTGGAGGATAACAGCAGCCCGTTCACACTGCAGTGGGGAAACAGGCTGGCGTGCAGGAACATTTTCACATAAGCCAAACATGACAGCTCCACTTCACTCATTTTCACTGCTTCCGCTGCTGTTTATATAAACAATTATAGATGGGGAAAAAGGACGAGAAATAATCAGAGAACGTGGAAAATCGATCAGAAATATCCACTAAACCTAAAGAACACAAAGAAACCTGACTgcgttcttcttctcctcctgtgGATTTACCGCAGACCACAGACCAGAGGAGCTTAGCGCCCCCCACTGCCTGCACACCACAACAGGAGGGGAACCTACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51510 True 594 lncRNA 0.43 2 20998097 20999626

Neighbor

gene id symbol gene type direction distance location
lmf1 lmf1,LOC107580192 coding downstream 7979 20981405 ~ 20990118 (-)
pemt pemt,LOC107719881 coding downstream 29551 20876434 ~ 20968546 (-)
rasd1 rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420 coding downstream 129017 20866800 ~ 20869080 (-)
cops3 cops3 coding downstream 200150 20783929 ~ 20797947 (-)
LOC103037418 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding downstream 216768 20735303 ~ 20781329 (-)
LOC103035258 NA coding upstream 3974 21003600 ~ 21018253 (-)
kif22 kif22,LOC107664627,LOC107654032 coding upstream 19495 21019121 ~ 21030167 (-)
rbp4 rbp4 coding upstream 44875 21044501 ~ 21048013 (-)
LOC103035971 fra10ac1,LOC108274300,LOC108431384 coding upstream 83038 21082664 ~ 21105307 (-)
noc3l noc3l coding upstream 297089 21296715 ~ 21320551 (-)
G38175 NA non-coding downstream 122580 20874665 ~ 20875517 (-)
G38183 NA non-coding downstream 124461 20873332 ~ 20873636 (-)
G38181 NA non-coding downstream 126265 20871535 ~ 20871832 (-)
G38180 NA non-coding downstream 127547 20870018 ~ 20870550 (-)
G38179 med9,LOC108412951 non-coding downstream 132376 20862801 ~ 20865721 (-)
G38205 NA non-coding upstream 32297 21031923 ~ 21035047 (-)
G38204 NA non-coding upstream 43824 21043450 ~ 21043889 (-)
G38222 NA non-coding upstream 141093 21140719 ~ 21141112 (-)
G38239 plce1 non-coding upstream 265311 21264937 ~ 21279439 (-)
G38246 NA non-coding upstream 290222 21289848 ~ 21291204 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 318666 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 1172445 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 1396813 19544225 ~ 19601284 (-)
G37616 NA other downstream 2362999 18633578 ~ 18635098 (-)
G37603 NA other downstream 2424921 18572691 ~ 18573176 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 873694 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 1013879 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 2381019 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 2465593 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 2683500 23683126 ~ 23720782 (-)

Expression


Co-expression Network