G38310 (LOC108443262,LOC108274343,LOC107695523,LOC107708934,LOC107654044,LOC107598610)


Basic Information

Item Value
gene id G38310
gene name LOC108443262,LOC108274343,LOC107695523,LOC107708934,LOC107654044,LOC107598610
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21870422 ~ 21871536 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51668
CTGGTCCAGTTTCACATGTGATTGGAACTTGTCTGAGAGCTGGGGCTGGATCGGTGCCATAAAACTTAGTCTCGTGAACCCACCAGTACGGCCTTTCTCCAAAAAGGACCCATTTCAGCACAAGGTTAAACCAGTCTCCAACCACTGCCACCCAGATCAGCTTGATGCTCACGTCTCTTTTCAGGTGGAACCAGATGgggaagaagatgaagaaggtGGTATGGAGGTCCGCCACTGAGGATACCAGTTGAAACCAGTTTTCGTAGGCTCTGTATTCCGTCTGCAGGTGGACAGCCAGATTCACCCCCCAGCTGTGGAGCAGATCCATATCCAACTACCAGCAGAGCTGCAGGGCTGCTGCCCAGTGGAGGGTCAGTGGTGATGGGGGTAAGGGAATGATGGAAAAGCGCTCTGGATGGAGGCTCCTGGCAGCTGTGTGGCTTTACCTTACTCTCGGACTTTGCTGTTCTCCTTCAGCTGGACTTTATTCAAGGTTGGACGGCCTTGTTT

Function

NR:

description
PREDICTED: glucose-6-phosphatase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51668 True 510 lncRNA 0.53 2 21870422 21871536

Neighbor

gene id symbol gene type direction distance location
ptges3l ptges3l,si:ch211-131k2.3,LOC107653952 coding upstream 19441 21843965 ~ 21850981 (+)
LOC111192390 NA coding upstream 42295 21824379 ~ 21828127 (+)
dlx3 dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903 coding upstream 241246 21625601 ~ 21629176 (+)
ace ace,LOC107653924,LOC107664635 coding upstream 396304 21430472 ~ 21474118 (+)
LOC103044640 NA coding upstream 517530 21352191 ~ 21352892 (+)
g6pc g6pc,g6pca.2,LOC106579337 coding downstream 1776 21873312 ~ 21878213 (+)
sgms1 sgms1 coding downstream 67093 21938629 ~ 21950677 (+)
LOC103023313 NA coding downstream 87911 21959447 ~ 21984284 (+)
LOC103021762 asah2,LOC107598643 coding downstream 116268 21987804 ~ 22011805 (+)
LOC111192422 NA coding downstream 198711 22070247 ~ 22097898 (+)
G38306 kat7,LOC108443263,LOC107695506,LOC107557320,LOC106579267 non-coding upstream 29144 21828150 ~ 21841278 (+)
G38301 NA non-coding upstream 91329 21778658 ~ 21779093 (+)
G38169 NA non-coding upstream 176657 21686883 ~ 21693765 (+)
G38152 NA non-coding upstream 249862 21574862 ~ 21620560 (+)
G38155 NA non-coding upstream 262095 21583458 ~ 21608327 (+)
G38314 NA non-coding downstream 9900 21881436 ~ 21882906 (+)
G38324 NA non-coding downstream 37525 21909061 ~ 21937073 (+)
G38325 NA non-coding downstream 62745 21934281 ~ 22013053 (+)
G38330 a1cf non-coding downstream 141963 22013499 ~ 22016473 (+)
G38375 NA non-coding downstream 181823 22053359 ~ 22053669 (+)
plce1 plce1,LOC107743958 other upstream 573599 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 741658 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 839625 21019169 ~ 21030797 (+)
G37943 NA other upstream 1712083 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 2358981 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 1875933 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 1876035 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 1876137 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 1876239 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 1876341 23747877 ~ 23747949 (+)

Expression


Co-expression Network