G38314


Basic Information

Item Value
gene id G38314
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21881436 ~ 21882906 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51673
CTTTTCATGTCTTTTGTGAACTTTATTAAACTGGACACAATTGTAAACTCCGGCAATGGAAGTTTGTAATTCACTTGTAAAACAATTACAGAATTCCGTAAGTCATTTACACATCAGCAGAGATGAACCTGTGTTTAAGTTCAAGTTAGTATTACACTGGTTAAAAGGTTTTTTAGAACACCCCCaggtttttctattttttgccatttaagctttTCAGGTCAAGTGGATATTCTGAAATAGTACAACATCCAGATAATGTAAATGGCACAAAGGTTAGCAGTAAGCTGTCAGAGTTTTGAGGGAAAaaataactgttaaaaaaaaataataataaaattgtgtttCTGGACTGACTGACCCatgtgagaaaataaaaaaaacagcttgtctgAGTCATACAGTACGGAGTCCAGGAGGggctgtgaataaaaaaaaaattaaattgagcAAACAATTTTTTTCTGCGGAAAGGAACATTTtcctgttttaatctgttatagggctgctgtgattataatCAGTTAGATATATTTGATTTGGTATAGTTTATATAACACAGAGACAGTCATCCTGCATtagtaaaatgtatatttcctTTATCCATGACTGGAAAACGACTGTATTTATGTTCCTTTGGTGGCAGTCTGCGGACTGTATGCGCTCTCCCCACACGGGAGGCGTCTCGCAGCAGCGGGAGCCAAAGGACCGGCTACTGATAGCGACGCCACCACCAcaatgtagataactgatgataatcacagcagccctgtaacagaccAAAAGCGGAAAATGCTACTTTCCCTTCAAGCTTTTTGTCGTAGTTTGCATAAAAAATCGTttcctgaaaataaagaaattgcttgctcaaattaaagaaatcatGAGCTCGAATTGCAAATTGTCCActcaaatgaaagaaaatgtgagctagatttatttttatttttttttccacagcccCTTCCAGGctccacaatacagcactgctactagACAACAAAACAATAGGAGTTctacaactgtactgtactaacgGTACTGTATATGGAAGTTAATGATGctacctttattttatttacatttactaacATTACAAATAGTTTGATCTGtttcaaataaatcaaaaatactatactcagcaatgTACTAAATTATTAGTACATTATTAAATGACTAATTATAAATTAGTCCAATGTTTTATTCGGATGGACTACACTTCCCTTGGCTTTCCTCCTCATATAAAGCAGCTGCATGTGTCAGTCTGCACTGGCTGAAGACGAGGCTCGCTCATTCCTCTCCAGCGCTGTGGTGAGGAAGATGCTCCTGCAGTAAAGTCTCAACCTCTGCTCTCTTACTCAGACTGTTAGCTTTACCCTGGAATCGCCCGTTCTTTGCTGCACCTTTTCCTTGTAGCAGCTCCGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51673 True 1426 lncRNA 0.37 3 21881436 21882906

Neighbor

gene id symbol gene type direction distance location
g6pc g6pc,g6pca.2,LOC106579337 coding upstream 3223 21873312 ~ 21878213 (+)
ptges3l ptges3l,si:ch211-131k2.3,LOC107653952 coding upstream 30455 21843965 ~ 21850981 (+)
LOC111192390 NA coding upstream 53309 21824379 ~ 21828127 (+)
dlx3 dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903 coding upstream 252260 21625601 ~ 21629176 (+)
ace ace,LOC107653924,LOC107664635 coding upstream 407318 21430472 ~ 21474118 (+)
sgms1 sgms1 coding downstream 55723 21938629 ~ 21950677 (+)
LOC103023313 NA coding downstream 76541 21959447 ~ 21984284 (+)
LOC103021762 asah2,LOC107598643 coding downstream 104898 21987804 ~ 22011805 (+)
LOC111192422 NA coding downstream 187341 22070247 ~ 22097898 (+)
prkg1 prkg1,prkg1b,LOC107695529,LOC106589397 coding downstream 214845 22097751 ~ 22350082 (+)
G38310 LOC108443262,LOC108274343,LOC107695523,LOC107708934,LOC107654044,LOC107598610 non-coding upstream 9900 21870422 ~ 21871536 (+)
G38306 kat7,LOC108443263,LOC107695506,LOC107557320,LOC106579267 non-coding upstream 40158 21828150 ~ 21841278 (+)
G38301 NA non-coding upstream 102343 21778658 ~ 21779093 (+)
G38169 NA non-coding upstream 187671 21686883 ~ 21693765 (+)
G38152 NA non-coding upstream 260876 21574862 ~ 21620560 (+)
G38324 NA non-coding downstream 26155 21909061 ~ 21937073 (+)
G38325 NA non-coding downstream 51375 21934281 ~ 22013053 (+)
G38330 a1cf non-coding downstream 130593 22013499 ~ 22016473 (+)
G38375 NA non-coding downstream 170453 22053359 ~ 22053669 (+)
G38391 NA non-coding downstream 369243 22252149 ~ 22252642 (+)
plce1 plce1,LOC107743958 other upstream 584613 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 752672 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 850639 21019169 ~ 21030797 (+)
G37943 NA other upstream 1723097 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 2369995 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 1864563 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 1864665 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 1864767 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 1864869 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 1864971 23747877 ~ 23747949 (+)

Expression


Co-expression Network