G38325


Basic Information

Item Value
gene id G38325
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21934281 ~ 22013053 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51691
aaaaggaaaaaagacttacaaactaaatgacttaaaacgtttcaaagtaaaaaaaaaagaaacaaaaaacagacacaCGAAATGAACACTACATATGAAAGCTTACGTCCACTCATTTTCCTTATGTTAAACATTCCTGATATTTTGTAACTTTAAATATCAAAGAAATACGGGGATGCAGGGATGGGACCGAGTATACTTGATAGtattttttagttcatttaaagGCAGCATTAACAAAAAGTATTCTGAGTTGTGTGAGTTATATTATCTAATTTAATCCAAAAAGATGTATCTTTTCTCATCTTTAATACCAAAATATGTAtacctacggtggccgagaaagcccagcgcagtgcaaattgaaaagcgctgcaaaagcacaaaacacatccatcaaaattacaac

Function

GO: NA

KEGG:

id description
ko00040 Pentose and glucuronate interconversions
ko00053 Ascorbate and aldarate metabolism
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko00983 Drug metabolism - other enzymes
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
TU51691 True 409 lncRNA 0.32 2 21934281 22013053

Neighbor

gene id symbol gene type direction distance location
g6pc g6pc,g6pca.2,LOC106579337 coding upstream 56068 21873312 ~ 21878213 (+)
ptges3l ptges3l,si:ch211-131k2.3,LOC107653952 coding upstream 83300 21843965 ~ 21850981 (+)
LOC111192390 NA coding upstream 106154 21824379 ~ 21828127 (+)
dlx3 dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903 coding upstream 305105 21625601 ~ 21629176 (+)
ace ace,LOC107653924,LOC107664635 coding upstream 460163 21430472 ~ 21474118 (+)
LOC111192422 NA coding downstream 57194 22070247 ~ 22097898 (+)
prkg1 prkg1,prkg1b,LOC107695529,LOC106589397 coding downstream 84698 22097751 ~ 22350082 (+)
dkk1 dkk1 coding downstream 355723 22368776 ~ 22371487 (+)
LOC111192392 LOC108416223 coding downstream 985626 22998679 ~ 23000623 (+)
tfam NA coding downstream 1374927 23387980 ~ 23396378 (+)
G38314 NA non-coding upstream 51375 21881436 ~ 21882906 (+)
G38310 LOC108443262,LOC108274343,LOC107695523,LOC107708934,LOC107654044,LOC107598610 non-coding upstream 62745 21870422 ~ 21871536 (+)
G38306 kat7,LOC108443263,LOC107695506,LOC107557320,LOC106579267 non-coding upstream 93003 21828150 ~ 21841278 (+)
G38301 NA non-coding upstream 155188 21778658 ~ 21779093 (+)
G38169 NA non-coding upstream 240516 21686883 ~ 21693765 (+)
G38330 a1cf non-coding downstream 446 22013499 ~ 22016473 (+)
G38375 NA non-coding downstream 40306 22053359 ~ 22053669 (+)
G38391 NA non-coding downstream 239096 22252149 ~ 22252642 (+)
G38392 NA non-coding downstream 265901 22278954 ~ 22327073 (+)
G38379 NA non-coding downstream 340456 22353509 ~ 22354614 (+)
plce1 plce1,LOC107743958 other upstream 637458 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 805517 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 903484 21019169 ~ 21030797 (+)
G37943 NA other upstream 1775942 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 2422840 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 1734416 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 1734518 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 1734620 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 1734722 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 1734824 23747877 ~ 23747949 (+)

Expression


Co-expression Network