G38375


Basic Information

Item Value
gene id G38375
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 22053359 ~ 22053669 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51764
CGCGTATTCTGTCatgatgagcacagaattgcagacacgtgcagatactgataaaaatatatgtttattataaaaataaacagatgtaatacgtggttgatacagaaaacagttaatcaccagaaaccagagcaatgtagacaaaaccataccataaacgagagacagtccagagttcatacacgagagatccaatgtcagaggtaatccaagaggcagtagtgaaaacacagtccaggtaatacacaagcaatccaatatcagaggcaaaggcaataatcggcgtcgagaaaacaaaggcaaggtcatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51764 True 311 lncRNA 0.39 1 22053359 22053669

Neighbor

gene id symbol gene type direction distance location
LOC103021762 asah2,LOC107598643 coding upstream 41554 21987804 ~ 22011805 (+)
LOC103023313 NA coding upstream 69075 21959447 ~ 21984284 (+)
sgms1 sgms1 coding upstream 102682 21938629 ~ 21950677 (+)
g6pc g6pc,g6pca.2,LOC106579337 coding upstream 175146 21873312 ~ 21878213 (+)
ptges3l ptges3l,si:ch211-131k2.3,LOC107653952 coding upstream 202378 21843965 ~ 21850981 (+)
LOC111192422 NA coding downstream 16578 22070247 ~ 22097898 (+)
prkg1 prkg1,prkg1b,LOC107695529,LOC106589397 coding downstream 44082 22097751 ~ 22350082 (+)
dkk1 dkk1 coding downstream 315107 22368776 ~ 22371487 (+)
LOC111192392 LOC108416223 coding downstream 945010 22998679 ~ 23000623 (+)
tfam NA coding downstream 1334311 23387980 ~ 23396378 (+)
G38330 a1cf non-coding upstream 36886 22013499 ~ 22016473 (+)
G38325 NA non-coding upstream 40306 21934281 ~ 22013053 (+)
G38324 NA non-coding upstream 116286 21909061 ~ 21937073 (+)
G38314 NA non-coding upstream 170453 21881436 ~ 21882906 (+)
G38310 LOC108443262,LOC108274343,LOC107695523,LOC107708934,LOC107654044,LOC107598610 non-coding upstream 181823 21870422 ~ 21871536 (+)
G38391 NA non-coding downstream 198480 22252149 ~ 22252642 (+)
G38392 NA non-coding downstream 225285 22278954 ~ 22327073 (+)
G38379 NA non-coding downstream 299840 22353509 ~ 22354614 (+)
G38438 NA non-coding downstream 356722 22410391 ~ 22410651 (+)
G38439 NA non-coding downstream 365219 22418888 ~ 22419169 (+)
plce1 plce1,LOC107743958 other upstream 756536 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 924595 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 1022562 21019169 ~ 21030797 (+)
G37943 NA other upstream 1895020 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 2541918 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 1693800 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 1693902 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 1694004 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 1694106 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 1694208 23747877 ~ 23747949 (+)

Expression


Co-expression Network