G38379


Basic Information

Item Value
gene id G38379
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 22353509 ~ 22354614 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51774
tgttttatctcTTTCAACCACATTAAGTTATCTATGTATTAATTCATCCACAAACAGGCAACAGTCAGTGCCTACAAGTTCCACACCACCAGGGGGCAGGACTGTGACACACTAGCGACCTACTGTAGTATGCCTGTACCAGTGTGAAGACAGCAAGcagtcagcacacacacacacacacacacacacaaacacacacacacacacacacaacacacacacacacacacttaaaaatcAGCCAAGAACATAGTCATGTACATGCTAACGTGCTGCTATATGATCCACCCACCCGTTCATGAATGTCAGCCATGTATTTTCAGGTCTTTGACCTTTCATCCTctaacataacacacacacacacacacacacacacacacacacacacacagtctacacaTAGTCTACACCACCACTAGAAGACTGCCTCCTGAAGGCTAACGCTAGCTTGAACAGAAACTACTGTCCTGGACAACAAATaatggatttttatttattgtaggaCCAGAGGTAaatatttatgtacatattCAGTGCTAATATTTTGTGATACTCGTAGGAAAGAGAGAAATCTTTATTGTCTGAATAAAACCCAGCTCTATTATTTAATGGTTTGTTTCGAATGTGTTTTATCTGTATGGTATTTTGTAGaatttgttaatttgtaacccctttattcctttatccccttcttcttcttcttcttcttcttcttcttcaccatAAATCCATGTTGGTGTGTTTGTACCAGTTTTTGGCATTATTGGAAGTGCCTTAACTCAGTGGCATTCACCATAGACCCCACATTTGTTTTGATGCTGCATGACTAAATCAAACACctcaacaaaaaacaatgtaatcCTTACTCGTTTGTGGCTTTTTTTAAGGTTCAGCGATTTATATGCCTTTTTCTTACAATAAAAGCATCATT

Function

GO: NA

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU51774 True 931 lncRNA 0.39 2 22353509 22354614

Neighbor

gene id symbol gene type direction distance location
prkg1 prkg1,prkg1b,LOC107695529,LOC106589397 coding upstream 3427 22097751 ~ 22350082 (+)
LOC111192422 NA coding upstream 255611 22070247 ~ 22097898 (+)
LOC103021762 asah2,LOC107598643 coding upstream 341704 21987804 ~ 22011805 (+)
LOC103023313 NA coding upstream 369225 21959447 ~ 21984284 (+)
sgms1 sgms1 coding upstream 402832 21938629 ~ 21950677 (+)
dkk1 dkk1 coding downstream 14162 22368776 ~ 22371487 (+)
LOC111192392 LOC108416223 coding downstream 644065 22998679 ~ 23000623 (+)
tfam NA coding downstream 1033366 23387980 ~ 23396378 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding downstream 1064239 23418853 ~ 23594042 (+)
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding downstream 1274073 23628687 ~ 23685558 (+)
G38392 NA non-coding upstream 26436 22278954 ~ 22327073 (+)
G38391 NA non-coding upstream 100867 22252149 ~ 22252642 (+)
G38375 NA non-coding upstream 299840 22053359 ~ 22053669 (+)
G38330 a1cf non-coding upstream 337036 22013499 ~ 22016473 (+)
G38325 NA non-coding upstream 340456 21934281 ~ 22013053 (+)
G38438 NA non-coding downstream 55777 22410391 ~ 22410651 (+)
G38439 NA non-coding downstream 64274 22418888 ~ 22419169 (+)
G38440 NA non-coding downstream 74787 22429401 ~ 22430016 (+)
G38460 NA non-coding downstream 260149 22614763 ~ 22617893 (+)
G38461 NA non-coding downstream 260933 22615547 ~ 22616453 (+)
plce1 plce1,LOC107743958 other upstream 1056686 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 1224745 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 1322712 21019169 ~ 21030797 (+)
G37943 NA other upstream 2195170 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 2842068 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 1392855 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 1392957 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 1393059 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 1393161 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 1393263 23747877 ~ 23747949 (+)

Expression


Co-expression Network