G38392


Basic Information

Item Value
gene id G38392
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 22278954 ~ 22327073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51791
tcaaccaatcagattgtgagGTTGGAACTAACTAACGGTTgtataattcatattatggcaagaactactcaactactcAAAGTCAAATCTTCTGGtagacactgcactgattttggacttgatgtaacacagtggatcaacaccagcagatgacatgtctctccaaaccatcactgattggtggaatcttcacactagacctcaagcagtttggactgtgtgtctctccactcttcctccagactctgctcccttgatttacaaataaaatgtaaaatttactgatgatcagtgatggtttgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51791 True 303 lncRNA 0.40 2 22278954 22327073

Neighbor

gene id symbol gene type direction distance location
LOC111192422 NA coding upstream 181056 22070247 ~ 22097898 (+)
LOC103021762 asah2,LOC107598643 coding upstream 267149 21987804 ~ 22011805 (+)
LOC103023313 NA coding upstream 294670 21959447 ~ 21984284 (+)
sgms1 sgms1 coding upstream 328277 21938629 ~ 21950677 (+)
g6pc g6pc,g6pca.2,LOC106579337 coding upstream 400741 21873312 ~ 21878213 (+)
dkk1 dkk1 coding downstream 41703 22368776 ~ 22371487 (+)
LOC111192392 LOC108416223 coding downstream 671606 22998679 ~ 23000623 (+)
tfam NA coding downstream 1060907 23387980 ~ 23396378 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding downstream 1091780 23418853 ~ 23594042 (+)
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding downstream 1301614 23628687 ~ 23685558 (+)
G38391 NA non-coding upstream 26312 22252149 ~ 22252642 (+)
G38375 NA non-coding upstream 225285 22053359 ~ 22053669 (+)
G38330 a1cf non-coding upstream 262481 22013499 ~ 22016473 (+)
G38325 NA non-coding upstream 265901 21934281 ~ 22013053 (+)
G38324 NA non-coding upstream 341881 21909061 ~ 21937073 (+)
G38379 NA non-coding downstream 26436 22353509 ~ 22354614 (+)
G38438 NA non-coding downstream 83318 22410391 ~ 22410651 (+)
G38439 NA non-coding downstream 91815 22418888 ~ 22419169 (+)
G38440 NA non-coding downstream 102328 22429401 ~ 22430016 (+)
G38460 NA non-coding downstream 287690 22614763 ~ 22617893 (+)
plce1 plce1,LOC107743958 other upstream 982131 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 1150190 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 1248157 21019169 ~ 21030797 (+)
G37943 NA other upstream 2120615 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 2767513 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 1420396 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 1420498 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 1420600 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 1420702 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 1420804 23747877 ~ 23747949 (+)

Expression


Co-expression Network