G38461


Basic Information

Item Value
gene id G38461
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 22615547 ~ 22616453 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51874
CtccgaggaggaagaggagctctaccccgcaccagcccgtactccattgccgtttcccccaggggctGTACTCTACCCGCGctcccagactgcagcggcggccgcgccgctctcccagactgcagcggcggcagcgccgctctccgagatttcagcggcggccgcgccgttcacccaagcaccagcagtcccagctgctccagctccagctcaagcaccagcagtcccagct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51874 True 232 lncRNA 0.69 2 22615547 22616453

Neighbor

gene id symbol gene type direction distance location
dkk1 dkk1 coding upstream 244060 22368776 ~ 22371487 (+)
prkg1 prkg1,prkg1b,LOC107695529,LOC106589397 coding upstream 265465 22097751 ~ 22350082 (+)
LOC111192422 NA coding upstream 517649 22070247 ~ 22097898 (+)
LOC103021762 asah2,LOC107598643 coding upstream 603742 21987804 ~ 22011805 (+)
LOC103023313 NA coding upstream 631263 21959447 ~ 21984284 (+)
LOC111192392 LOC108416223 coding downstream 382226 22998679 ~ 23000623 (+)
tfam NA coding downstream 771527 23387980 ~ 23396378 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding downstream 802400 23418853 ~ 23594042 (+)
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding downstream 1012234 23628687 ~ 23685558 (+)
LOC111192424 NA coding downstream 1784665 24401118 ~ 24402659 (+)
G38440 NA non-coding upstream 185531 22429401 ~ 22430016 (+)
G38439 NA non-coding upstream 196378 22418888 ~ 22419169 (+)
G38438 NA non-coding upstream 204896 22410391 ~ 22410651 (+)
G38379 NA non-coding upstream 260933 22353509 ~ 22354614 (+)
G38392 NA non-coding upstream 288474 22278954 ~ 22327073 (+)
G38469 NA non-coding downstream 126796 22743249 ~ 22743787 (+)
G38521 NA non-coding downstream 350458 22966911 ~ 22967205 (+)
G38523 NA non-coding downstream 351638 22968091 ~ 22968369 (+)
G38544 NA non-coding downstream 395003 23011456 ~ 23080378 (+)
G38552 NA non-coding downstream 480527 23096980 ~ 23097337 (+)
plce1 plce1,LOC107743958 other upstream 1318724 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 1486783 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 1584750 21019169 ~ 21030797 (+)
G37943 NA other upstream 2457208 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 3104106 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 1131016 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 1131118 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 1131220 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 1131322 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 1131424 23747877 ~ 23747949 (+)

Expression


Co-expression Network