G38552


Basic Information

Item Value
gene id G38552
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 23096980 ~ 23097337 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51990
caaaaatcagtgtctcagaaaattagaatattatataagaccaattggtatttttagcagtgtgggcagtgtgccaagtcctgctggaaaatgaaatctgcatcttcataaaagttgtcagtagcagagggaagcatgaagtgctgtaagatttttccgggaaaacacaaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatatcagacatgtctctccaaaccatcactgattggtggaatcttcacactagacctcgagcagtttggactgtgtgtctccccactcttcctccagactctgctcccttgatttacaaatgaaatgtaaaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51990 True 358 lncRNA 0.40 1 23096980 23097337

Neighbor

gene id symbol gene type direction distance location
LOC111192392 LOC108416223 coding upstream 96357 22998679 ~ 23000623 (+)
dkk1 dkk1 coding upstream 725493 22368776 ~ 22371487 (+)
prkg1 prkg1,prkg1b,LOC107695529,LOC106589397 coding upstream 746898 22097751 ~ 22350082 (+)
LOC111192422 NA coding upstream 999082 22070247 ~ 22097898 (+)
LOC103021762 asah2,LOC107598643 coding upstream 1085175 21987804 ~ 22011805 (+)
tfam NA coding downstream 290643 23387980 ~ 23396378 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding downstream 321516 23418853 ~ 23594042 (+)
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding downstream 531350 23628687 ~ 23685558 (+)
LOC111192424 NA coding downstream 1303781 24401118 ~ 24402659 (+)
LOC111192396 LOC108411010 coding downstream 1534366 24631703 ~ 24648610 (+)
G38544 NA non-coding upstream 16602 23011456 ~ 23080378 (+)
G38523 NA non-coding upstream 128611 22968091 ~ 22968369 (+)
G38521 NA non-coding upstream 129775 22966911 ~ 22967205 (+)
G38469 NA non-coding upstream 353193 22743249 ~ 22743787 (+)
G38460 NA non-coding upstream 479087 22614763 ~ 22617893 (+)
G38565 NA non-coding downstream 75155 23172492 ~ 23222765 (+)
G38577 NA non-coding downstream 172848 23270185 ~ 23270581 (+)
G38583 NA non-coding downstream 208721 23306058 ~ 23306305 (+)
G38589 NA non-coding downstream 252541 23349878 ~ 23355125 (+)
G38585 ube2d2,ube2d1b,ube2d1,LOC105891213,LOC107717106,LOC107553913,LOC106607701 non-coding downstream 283631 23380968 ~ 23387421 (+)
plce1 plce1,LOC107743958 other upstream 1800157 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 1968216 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 2066183 21019169 ~ 21030797 (+)
G37943 NA other upstream 2938641 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 3585539 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 650132 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 650234 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 650336 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 650438 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 650540 23747877 ~ 23747949 (+)

Expression


Co-expression Network