G38585 (ube2d2,ube2d1b,ube2d1,LOC105891213,LOC107717106,LOC107553913,LOC106607701)


Basic Information

Item Value
gene id G38585
gene name ube2d2,ube2d1b,ube2d1,LOC105891213,LOC107717106,LOC107553913,LOC106607701
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 23380968 ~ 23387421 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU52027
CCAAATTAGGAACCACTCCATTTCGTCAGCCCCCTTTTCAAAATACTAGTTCAGCTATTATTATTGGTCATTGAAGATGGTAAATGTTAATAGTAGAATGTGTTTAATAATATAACCTAAGTACTTTTTAGATACTAGAATTTACAGTGATTTGTGACTTTAAAAAATGTCCATTAAGTCTTCACATTGCATACTTTTGGGTCCATTCTCTTGCTAGTCTGttgtattttctttgtCTGACTTGTAGATGTGTGCTATGTCTGGGACTAGGGGGTCGTCAGGGTTTGGGTCACACAGCAATGAGCATATGGACAATAGAACTTTTGAAACTGTTAGGGCTGGGGACCACTGTGACCGCAAGATGTCCAAGCAAATACTTCCATTACTGTTTATGTTGGGATGATAAATTTTTGTCGTAAATGCTTTGGTGGCTTGAAGGGGTAGTCTGTGGGAAAGTGGATAGTGAGGAAGAAGACCCCTCCTTGGTACGGACTATCACTTGGTCCCATAATTGTTGCCTGCCAGTGAAACAAGTCATCACCCACTGGTCCAGCAGAGCACTGTGCAGGAGGGTCCCTTTGCAAGTCTTGAAGCTCCTTCTGTATTCTTTTTAACGCCATAACCcccgtgtgtgtgagtgtgtgtataaatgcgGTGTGAGAGCGGACTGCCCGGTTTTATTGCTCCGCGAGCGCTAGCTTACAGCACTTTCTGTTTCC

Function

symbol description
ube2d1b Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D1 (ubiquitin conjugating enzyme E2 D1).
ube2d2 Predicted to enable ubiquitin conjugating enzyme activity. Acts upstream of or within negative regulation of smoothened signaling pathway. Predicted to be active in nucleus. Orthologous to several human genes including UBE2D2 (ubiquitin conjugating enzyme E2 D2).
ube2d1 Enables ubiquitin conjugating enzyme activity and ubiquitin protein ligase activity. Involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Located in cytoplasm. Part of ubiquitin ligase complex.

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 D2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52027 True 719 lncRNA 0.43 7 23380968 23387421

Neighbor

gene id symbol gene type direction distance location
LOC111192392 LOC108416223 coding upstream 380345 22998679 ~ 23000623 (+)
dkk1 dkk1 coding upstream 1009481 22368776 ~ 22371487 (+)
prkg1 prkg1,prkg1b,LOC107695529,LOC106589397 coding upstream 1030886 22097751 ~ 22350082 (+)
LOC111192422 NA coding upstream 1283070 22070247 ~ 22097898 (+)
LOC103021762 asah2,LOC107598643 coding upstream 1369163 21987804 ~ 22011805 (+)
tfam NA coding downstream 559 23387980 ~ 23396378 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding downstream 31432 23418853 ~ 23594042 (+)
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding downstream 241266 23628687 ~ 23685558 (+)
LOC111192424 NA coding downstream 1013697 24401118 ~ 24402659 (+)
LOC111192396 LOC108411010 coding downstream 1244282 24631703 ~ 24648610 (+)
G38589 NA non-coding upstream 25843 23349878 ~ 23355125 (+)
G38583 NA non-coding upstream 74663 23306058 ~ 23306305 (+)
G38577 NA non-coding upstream 110387 23270185 ~ 23270581 (+)
G38565 NA non-coding upstream 158203 23172492 ~ 23222765 (+)
G38552 NA non-coding upstream 283631 23096980 ~ 23097337 (+)
G38611 NA non-coding downstream 65943 23453364 ~ 23453762 (+)
G38628 NA non-coding downstream 107651 23495072 ~ 23513968 (+)
G38633 NA non-coding downstream 133511 23520932 ~ 23523870 (+)
G38717 NA non-coding downstream 390853 23778274 ~ 23845827 (+)
G38710 NA non-coding downstream 396544 23783965 ~ 23784746 (+)
plce1 plce1,LOC107743958 other upstream 2084145 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 2252204 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 2350171 21019169 ~ 21030797 (+)
G37943 NA other upstream 3222629 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 3869527 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 360048 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 360150 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 360252 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 360354 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 360456 23747877 ~ 23747949 (+)

Expression


Co-expression Network