ube2d1 (ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701)


Basic Information

Item Value
gene id ube2d1
gene name ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 23380645 ~ 23387442 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU52110
tcTCACGGAAACAGAAAGTGCTGTAAGCTAGCGCTCGCGGAGCAATAAAACCGGGCAGTCCGCTCTCACACcgcatttatacacacactcacacacacgggGGTTATGGCGTTAAAAAGAATACAGAAGGAGCTTCAAGACTTGCAAAGGGACCCTCCTGCACAGTGCTCTGCTGGACCAGTGGGTGATGACTTGTTTCACTGGCAGGCAACAATTATGGGACCAAGTGATAGTCCGTACCAAGGAGGGGTCTTCTTCCTCACTATCCACTTTCCCACAGACTACCCCTTCAAGCCACCAAAGCATTTACGACAAAAATTTATCATCCCAACATAAACAGTAATGGAAGTATTTGCTTGGACATCTTGCGGTCACAGTGGTCCCCAGCCCTAACAGTTTCAAAAGTTCTATTGTCCATATGCTCATTGCTGTGTGACCCAAACCCTGACGACCCCCTAGTCCCAGACATAGCACACATCTACAAGTCAGacaaagaaaaatacaaCAGACTAGCAAGAGAATGGACCCAAAAGTATGCAATGTGAAGACTTAATGGACATTTTTTAAAGTCACAAATCACTGTAAATTCTAGTATCTAAAAAGTACTTAGGTTATATTATTAAACACATTCTACTATTAACATTTACCATCTTCAATGACCAATAATAATAGCTGAACTAGTATTTTGAAAAGGGGGCTGACGAAATGGAGTGGTTCCTAATTTGGTGCGTTTGGTCATCCCCACCCTCCCCCACCCTTCCCCCCCCCCAAAACGGTGTTGGGCACTTTGTGTTTTCTTGTtctataaatcatatttaagaTTGGCATGGATTATGCAGCTGCAGTGAGCCCAGGAGAGGGAAATTGTGgaattaaaacagttttattgtATCTCTCTTTTAATtgattgtttttctttagatatttttattgtatagttAAAACAACTATACTTGatctattttttcctttttttatttttcattaaaatttgTTGAAAAAGCATGTGCCTGGCTGTCTatgaattaaattttttatattgtgttgcA
>XM_007235378.3
attagcattagcttctcTCACGGAAACAGAAAGTGCTGTAAGCTAGCGCTCGCGGAGCAATAAAACCGGGCAGTCCGCTCTCACACcgcatttatacacacactcacacacacgggGGTTATGGCGTTAAAAAGAATACAGAAGGAGCTTCAAGACTTGCAAAGGGACCCTCCTGCACAGTGCTCTGCTGGACCAGTGGGTGATGACTTGTTTCACTGGCAGGCAACAATTATGGGACCAAGTGATAGTCCGTACCAAGGAGGGGTCTTCTTCCTCACTATCCACTTTCCCACAGACTACCCCTTCAAGCCACCAAAGGTAGCATTTACGACAAAAATTTATCATCCCAACATAAACAGTAATGGAAGTATTTGCTTGGACATCTTGCGGTCACAGTGGTCCCCAGCCCTAACAGTTTCAAAAGTTCTATTGTCCATATGCTCATTGCTGTGTGACCCAAACCCTGACGACCCCCTAGTCCCAGACATAGCACACATCTACAAGTCAGacaaagaaaaatacaaCAGACTAGCAAGAGAATGGACCCAAAAGTATGCAATGTGAAGACTTAATGGACATTTTTTAAAGTCACAAATCACTGTAAATTCTAGTATCTAAAAAGTACTTAGGTTATATTATTAAACACATTCTACTATTAACATTTACCATCTTCAATGACCAATAATAATAGCTGAACTAGTATTTTGAAAAGGGGGCTGACGAAATGGAGTGGTTCCTAATTTGGTGCGTTTGGTCATCCCCACCCTCCCCCACCCTTCCCCCCCCCCAAAACGGTGTTGGGCACTTTGTGTTTTCTTGTtctataaatcatatttaagaTTGGCATGGATTATGCAGCTGCAGTGAGCCCAGGAGAGGGAAATTGTGgaattaaaacagttttattgtATCTCTCTTTTAATtgattgtttttctttagatatttttattgtatagttAAAACAACTATACTTGatctattttttcctttttttatttttcattaaaatttgTTGAAAAAGCATGTGCCTGGCTGTCTatgaattaaattttttatattgtgttgcA

Function

symbol description
ube2d1b Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D1 (ubiquitin conjugating enzyme E2 D1).
ube2d1 Enables ubiquitin conjugating enzyme activity and ubiquitin protein ligase activity. Involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Located in cytoplasm. Part of ubiquitin ligase complex.

NR:

description
ubiquitin-conjugating enzyme E2 D1

GO:

id name namespace
GO:0035519 protein K29-linked ubiquitination biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0085020 protein K6-linked ubiquitination biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0044314 protein K27-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D

RNA

RNA id representative length rna type GC content exon number start site end site
TU52110 False 1049 lncRNA 0.40 7 23380645 23387427
XM_007235378.3 True 1068 mRNA 0.40 7 23380645 23387442

Neighbor

gene id symbol gene type direction distance location
ipmk ipmk,LOC107708928,LOC107695532,LOC108248332 coding downstream 8144 23343309 ~ 23372501 (-)
LOC111192391 LOC106675123,LOC107373546,LOC102213288,LOC106533383,LOC106676227,LOC106675084,LOC105893721 coding downstream 385741 22990730 ~ 22994904 (-)
pcdh15 pcdh15b,LOC108273410,LOC107695531,LOC107654051 coding downstream 456764 22487967 ~ 22923881 (-)
LOC103046911 NA coding downstream 922464 22453787 ~ 22458181 (-)
aarsd1 aarsd1,LOC107739756,LOC107695514,LOC107708900 coding downstream 1479905 21881042 ~ 21900740 (-)
slc16a9 slc16a9 coding upstream 381530 23768972 ~ 23778550 (-)
ccdc6 ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 coding upstream 399316 23786758 ~ 23821493 (-)
LOC111192394 NA coding upstream 494888 23882330 ~ 23904309 (-)
LOC103046635 mylpfb,LOC108443170,LOC107571443,LOC107674915,LOC108274226,LOC101482131,LOC102196412 coding upstream 1054589 24442031 ~ 24446943 (-)
LOC103046327 NA coding upstream 1075436 24462878 ~ 24475423 (-)
G38584 NA non-coding downstream 59399 23320989 ~ 23321246 (-)
G38578 NA non-coding downstream 110062 23270190 ~ 23270583 (-)
G38573 NA non-coding downstream 150229 23230008 ~ 23230416 (-)
G38564 NA non-coding downstream 219644 23160800 ~ 23161001 (-)
G38563 NA non-coding downstream 223907 23156424 ~ 23156738 (-)
G38668 NA non-coding upstream 133613 23521055 ~ 23522456 (-)
G38675 NA non-coding upstream 152048 23539490 ~ 23540060 (-)
G38680 NA non-coding upstream 206799 23594241 ~ 23597133 (-)
LOC111192412 NA non-coding upstream 443870 23831312 ~ 23836395 (-)
LOC111192414 NA non-coding upstream 449469 23836911 ~ 23838004 (-)
a1cf a1cf,LOC107654048 other downstream 1342141 22013505 ~ 22038504 (-)
G38338 g6pc,g6pca.2,LOC107682718 other downstream 1502268 21873320 ~ 21878377 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 2701214 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 3554993 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 3779361 19544225 ~ 19601284 (-)
LOC111192393 NA other upstream 77777 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 295684 23683126 ~ 23720782 (-)
G38791 NA other upstream 443876 23831318 ~ 23960895 (-)
LOC111192423 pgap3,LOC107694083,LOC107684764 other upstream 989234 24376676 ~ 24385379 (-)
LOC103047660 doc2a,LOC108411015,LOC108274005,LOC103152347,LOC105024376 other upstream 1122035 24509477 ~ 24599196 (-)

Expression


Co-expression Network