LOC111192393


Basic Information

Item Value
gene id LOC111192393
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 23465219 ~ 23510619 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU52138
CAGGCCCGTCGCGATGGGGCAGGCAAACCAGgcaattgcttggggccccaaGCTGGCCTGGGGCCCCCAGACAACAACAGGTTAAGAATTAAATGCAGCGACAAACTGTGTGAGCCCCCCTTTACATTCTCAAAGTCAATGAGCAATGACACTGTTCtcagaatccccctcaagggGGCCCCTCCCACCAGCTGCTGAAGGCAGGCAGACACTGTCCTGGCAGACAGCCAAGTTTTAGACGCCGGCAAATATGAAACTTAACCATGAAGCGAATTTATCCATCAGGAAgccaaaagagaaaacaaaagaaggaagaggaacacaaaaaaacacaagacagtgGTGCTTTGCTTAAATTTCTAAGCCCTCTTCCTAAAGATGCCTCTGATGAAGCTGTACCATCAACAGCATCTCTCATTGATGAGAAAGACAATGAGGAAGAAGAAGACATGGAAGAAACTACATCCACTGGTGCCATGGCCTCAACATCAACATACATTGAGTCTGCACTACATCTCAGCACTGGTGTTACCTCAACAGCACAAGCAACTCTCATTGATGAGGAAGACAACATGGGAGAAGAAGATATGGGAGGAACTACATCCAGTGGTACCATGGCCTCAACATCAACACAAATTGCATCTCCACCACATCTCAGCACTGGTGATACCTCTACAGCACAAGccatttctcattttttgcaaataaatg
>XR_002649895.1
CATCAGGTGCATCTGTCTAATTCTCAGACAACAGCATACTTAAATCTGCTATGTTCAGCTACAAGTAGTAAATTTGTAAAGTAGTTAGTTTGAGGTGTTTAGCATTGGTAGCTATATCAATGCAGCTGGGATCCatctaaatatcaaaatcagaaaaaaatattgtaatgctaTCTCTAACCATATCTTTTCTTTCTACCTCATGGTGCTTTGCTTAAATTTCTAAGCCCTCTTCCTAAAGATGCCTCTGATGAAGCTGTACCATCAACAGCATCTCTCATTGATGAGAAAGACAATGAGGAAGAAGAAGACATGGAAGAAACTACATCCACTGGTGCCATGGCCTCAACATCAACATACATTGAGTCTGCACTACATCTCAGCACTGGTGTTACCTCAACAGCACAAGCAACTCTCATTGATGAGGAAGACAACATGGGAGAAGAAGATATGGGAGGAACTACATCCAGTGGTACCATGGCCTCAACATCAACACAAATTGCATCTCCACCACATCTCAGCACTGGTGATACCTCTACAGCACAAGGTACCACAagcactttcattatatatttttgcatatgGGAGTGTTTTGTTTCAGCTGTTCAAATGTACCTTTGTATACCTGTGTATTTATACTTACTATGCAatttgcactttattttttataattgttgtTATGGGATACTAttgctgtgttttttacatAAAGTGTGTTGGACCTAAACTGTGTGTATATGCTGTGGTTCTTGAAGGTGGACCGCGgccagatatgttttttttttttggccggaGGGGGGTTTGGGCATGAGATTTCTGGTGTGGAGGTTGGGGGGGCCCCGGTTGGTGTctttgcttggggcccccaaaTACCTTGAAATGGCCCTGGTAGTGCGGCATTttaagaataaagttgtaatatttcgagaataaagtcataaacTTTTGTgattaatatacaaaaaatggTGCAGCATCTAGGGGATAATATTGTGGCGTTTCTAGTTGTAATgccattattatttaatttttaaaataaactgttttttttttttcagagtggcCCTAAAGTGCCATCATATACCATAcatgttgtgccaaattcagcacccccgccatgaaaagcaccctctctcaggagCGAAAATCTGAGATAATACGCACCAAAAGAGATTACACTTGTTAAACGAGTCGTGTTTTGGGAGCCCGGGCATGGCATGGATTGTATAGTCTGAGTAAACCCTTAGTTGTCAGTTGTATGTCCTCAGATCTCTTTGTGTCTGGTTCTCAGTTTGGTTTTGAAACATCTTCCTTCCAGTTTTAGAAACAAGTCTCTCAGTTTAGCTCCGTAAATCACACGAGTCGGCTTGTTTAGAGTCGTGAAACAACTTGCACAACacacttaaagaaaaaaaaaaatcagcaaaaaatgTCTCgcgcattgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52138 False 711 TUCP 0.47 5 23465219 23510619
XR_002649895.1 True 1458 lncRNA 0.40 3 23507927 23509846

Neighbor

gene id symbol gene type direction distance location
ipmk ipmk,LOC107708928,LOC107695532,LOC108248332 coding downstream 92718 23343309 ~ 23372501 (-)
LOC111192391 LOC106675123,LOC107373546,LOC102213288,LOC106533383,LOC106676227,LOC106675084,LOC105893721 coding downstream 470315 22990730 ~ 22994904 (-)
pcdh15 pcdh15b,LOC108273410,LOC107695531,LOC107654051 coding downstream 541338 22487967 ~ 22923881 (-)
LOC103046911 NA coding downstream 1007038 22453787 ~ 22458181 (-)
aarsd1 aarsd1,LOC107739756,LOC107695514,LOC107708900 coding downstream 1564479 21881042 ~ 21900740 (-)
slc16a9 slc16a9 coding upstream 258353 23768972 ~ 23778550 (-)
ccdc6 ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 coding upstream 276139 23786758 ~ 23821493 (-)
LOC111192394 NA coding upstream 371711 23882330 ~ 23904309 (-)
LOC103046635 mylpfb,LOC108443170,LOC107571443,LOC107674915,LOC108274226,LOC101482131,LOC102196412 coding upstream 931412 24442031 ~ 24446943 (-)
LOC103046327 NA coding upstream 952259 24462878 ~ 24475423 (-)
G38584 NA non-coding downstream 143973 23320989 ~ 23321246 (-)
G38578 NA non-coding downstream 194636 23270190 ~ 23270583 (-)
G38573 NA non-coding downstream 234803 23230008 ~ 23230416 (-)
G38564 NA non-coding downstream 304218 23160800 ~ 23161001 (-)
G38563 NA non-coding downstream 308481 23156424 ~ 23156738 (-)
G38668 NA non-coding upstream 10436 23521055 ~ 23522456 (-)
G38675 NA non-coding upstream 28871 23539490 ~ 23540060 (-)
G38680 NA non-coding upstream 83622 23594241 ~ 23597133 (-)
LOC111192412 NA non-coding upstream 320693 23831312 ~ 23836395 (-)
LOC111192414 NA non-coding upstream 326292 23836911 ~ 23838004 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other downstream 77777 23380645 ~ 23387442 (-)
a1cf a1cf,LOC107654048 other downstream 1426715 22013505 ~ 22038504 (-)
G38338 g6pc,g6pca.2,LOC107682718 other downstream 1586842 21873320 ~ 21878377 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 2785788 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 3639567 19818268 ~ 19825652 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 172507 23683126 ~ 23720782 (-)
G38791 NA other upstream 320699 23831318 ~ 23960895 (-)
LOC111192423 pgap3,LOC107694083,LOC107684764 other upstream 866057 24376676 ~ 24385379 (-)
LOC103047660 doc2a,LOC108411015,LOC108274005,LOC103152347,LOC105024376 other upstream 998858 24509477 ~ 24599196 (-)
LOC103039539 LOC108411013 other upstream 1154977 24665596 ~ 24689655 (-)

Expression


Co-expression Network