G38717


Basic Information

Item Value
gene id G38717
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 23778274 ~ 23845827 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU52201
gcagcagcagcacttacCAAAGACCCAGCGGAGCCCCGGCGGGGATGATAGCAGGCGGTGCGGGGGATCAGTGAGCGCAGGGCGGCGGAGAGGCGGCTGCTGGCCGGGCCACCATGGAGCTGACCGAGGTTAACTAGCTTATCATGACGGTTTAAAACAGTGGCAGCAATAATAAACAGACAACCGGACAGGGCTCTtcatcacagctgctgctctctgtgcctctttctctttctctctgtgtgtctgctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52201 True 312 lncRNA 0.57 2 23778274 23845827

Neighbor

gene id symbol gene type direction distance location
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding upstream 92716 23628687 ~ 23685558 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding upstream 184232 23418853 ~ 23594042 (+)
tfam NA coding upstream 381896 23387980 ~ 23396378 (+)
LOC111192392 LOC108416223 coding upstream 777651 22998679 ~ 23000623 (+)
dkk1 dkk1 coding upstream 1406787 22368776 ~ 22371487 (+)
LOC111192424 NA coding downstream 555291 24401118 ~ 24402659 (+)
LOC111192396 LOC108411010 coding downstream 785876 24631703 ~ 24648610 (+)
LOC103037544 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 806802 24652629 ~ 24663580 (+)
mto1 mto1 coding downstream 851309 24697136 ~ 24713813 (+)
LOC103035992 NA coding downstream 885073 24730900 ~ 24744132 (+)
G38633 NA non-coding upstream 254404 23520932 ~ 23523870 (+)
G38628 NA non-coding upstream 264306 23495072 ~ 23513968 (+)
G38611 NA non-coding upstream 324512 23453364 ~ 23453762 (+)
G38585 ube2d2,ube2d1b,ube2d1,LOC105891213,LOC107717106,LOC107553913,LOC106607701 non-coding upstream 390853 23380968 ~ 23387421 (+)
G38589 NA non-coding upstream 423149 23349878 ~ 23355125 (+)
LOC107197179 NA non-coding downstream 539909 24385736 ~ 24388302 (+)
G38832 NA non-coding downstream 580619 24426446 ~ 24426725 (+)
G38822 NA non-coding downstream 597807 24443634 ~ 24444406 (+)
G38833 NA non-coding downstream 612454 24458281 ~ 24514991 (+)
G38837 LOC108443171 non-coding downstream 620562 24466389 ~ 24475428 (+)
trnar-ccu_27 NA other upstream 28081 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 28183 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 28285 23749917 ~ 23749989 (+)
trnar-ccu_24 NA other upstream 28387 23749815 ~ 23749887 (+)
trnar-ccu_23 NA other upstream 28489 23749713 ~ 23749785 (+)
G38817 NA other downstream 128334 23974161 ~ 23974520 (+)
G38870 NA other downstream 770957 24616784 ~ 24617452 (+)
G39179 NA other downstream 1529132 25374959 ~ 25375344 (+)

Expression


Co-expression Network