G38723


Basic Information

Item Value
gene id G38723
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 23830486 ~ 23951902 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU52207
CAGccaataacaaaataaacaaaacatccaGTCCATTATAAATGACCTGTATCTAGTCtgcaaagtaaagaaaaaacagcaagacaaaaataagtctgttttacagGATCCTCTCCAATGATTTGATTCTTCTCGTCACTTACTGTGACACACTTTTGAAGGCAAAAGCTTGCTTGCACTCAAACCACAGAGGTTACACACTGGCTGCATCCAGAAACTTTTGGTagttctcctctcctcctcccctGGAAGAAAGTGGAGGAGTAAaggggaggaggagaggagagaagaagcagtaattggggaaatggtaCAGCTGTTCCTTTTTTTATAGGATGTTGACCACTACAAACTGGAGGCCAAACCATCCCTTTCTTTTGACTTCTTTAGTATGCAGACAGGTGGTAAGATGGGGCCACAATATCAGTTTTCAaacggagaggaggaggatcagtAGGACAAGGAAACAAATTTTGGGTTTTTTGGATGCACCCATAGTGCTGCCaactaaacatttaatatttttttctttgttttatattaattatcttTAAGCATTAGGTTATGATATCTATGTGGTTTTataaattgtaataata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52207 True 599 lncRNA 0.38 2 23830486 23951902

Neighbor

gene id symbol gene type direction distance location
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding upstream 144928 23628687 ~ 23685558 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding upstream 236444 23418853 ~ 23594042 (+)
tfam NA coding upstream 434108 23387980 ~ 23396378 (+)
LOC111192392 LOC108416223 coding upstream 829863 22998679 ~ 23000623 (+)
dkk1 dkk1 coding upstream 1458999 22368776 ~ 22371487 (+)
LOC111192424 NA coding downstream 449216 24401118 ~ 24402659 (+)
LOC111192396 LOC108411010 coding downstream 679801 24631703 ~ 24648610 (+)
LOC103037544 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 700727 24652629 ~ 24663580 (+)
mto1 mto1 coding downstream 745234 24697136 ~ 24713813 (+)
LOC103035992 NA coding downstream 778998 24730900 ~ 24744132 (+)
G38710 NA non-coding upstream 45740 23783965 ~ 23784746 (+)
G38633 NA non-coding upstream 306616 23520932 ~ 23523870 (+)
G38628 NA non-coding upstream 316518 23495072 ~ 23513968 (+)
G38611 NA non-coding upstream 376724 23453364 ~ 23453762 (+)
G38585 ube2d2,ube2d1b,ube2d1,LOC105891213,LOC107717106,LOC107553913,LOC106607701 non-coding upstream 443065 23380968 ~ 23387421 (+)
LOC107197179 NA non-coding downstream 433834 24385736 ~ 24388302 (+)
G38832 NA non-coding downstream 474544 24426446 ~ 24426725 (+)
G38822 NA non-coding downstream 491732 24443634 ~ 24444406 (+)
G38833 NA non-coding downstream 506379 24458281 ~ 24514991 (+)
G38837 LOC108443171 non-coding downstream 514487 24466389 ~ 24475428 (+)
trnar-ccu_27 NA other upstream 80293 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 80395 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 80497 23749917 ~ 23749989 (+)
trnar-ccu_24 NA other upstream 80599 23749815 ~ 23749887 (+)
trnar-ccu_23 NA other upstream 80701 23749713 ~ 23749785 (+)
G38817 NA other downstream 22259 23974161 ~ 23974520 (+)
G38870 NA other downstream 664882 24616784 ~ 24617452 (+)
G39179 NA other downstream 1423057 25374959 ~ 25375344 (+)

Expression


Co-expression Network