G51274


Basic Information

Item Value
gene id G51274
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2255099 ~ 2350486 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58428
CTGGCTTCATTTATGATAGTGGCAATTTCATAAACTTAAAGAGCTATTGTGCTTATTGTGCACAGAAGAGAAGATATTGTTGAATAAAGTCATTATTTTTGTTATGTTTTTGCACACAAAAAAGCATTCTTGTCGCTTCATAAAATTAAGGTTGAACCACTGCAATCGCATCGATTTTTGTTAACAATGTCTTTAGTACTTTTCTGGACCTTGAAATTGGTGGTTAAATTGCTGCCTTTGGACGAGTTATATAACTCTCAGATTTCATCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGAAGGTCTTGCAGATTTGGAACGACATGAGGGTGAGTAATTAATGACAGAAATTACATTTTTGGGTGAACTAACCTTTTAATGTGAAGGATCAGTTAAATGTAAGCACTGCAAGTTGTGGTAGTATGCTGTTTAGAAGGAAATTGACTGCAGAGGAATGAGTGGTTGGAGTATTTAGAATTTAGAAACAATCATTATTTTTTGCAGTTAGGTGCCGCTAGTGGTACAGAGACTACACACTAAAGAACAAATATTACTTATAAGGTATACAAACCGTTAAATAGGAGGTGAGATGGTATGCCATCTCACGTACATCTGCACTGGCAACTAATAGTGAATAAGTTTTTGAGGATTTTTGTTTTACATCGTTTAGCTTATCGCTGTAGAGATGGTCTTGGGAGTAGACAATCCTCTCCATTTTAAACTGAGAATGTATTTTCTCCTCAGCTTTCTGAAACTGCTCATCAAGAAAATCTTCAATTGGATTTTTAGCAGCCCTCAACAGGTGAGAGAAGGCATTAAAATGAGAATTAACAATACGGTCCACACAGGCGTGAACAATGTCTGTAAATAAAAGAGACGAGAAAGAGGAGGTAAAAAAAAAAACTTATCATGTACCTGTAATTGCCACTAATTTTATGCATTTGTATAATTCTCAATCATTTTGAAAGAAACTTGTTTTTTGTACAGAAGTAACAGATCACATGTATATTCAAATTTAGGGTTAAAATTAAAATTGAGGTCACTGTAATCCATCAAACATTATGGTGCCATTCACCTTTGACATCTTTGAGCAGCTCTAAAGCAGGTTCCTCCAGCTCCTCGATGTGTTTCTTGACAATGTTCTCAAAAGTTCTGTAGTTCACAAATCCAGGAAGCTCCTTTCCTCTACGAGTCTTAACATACTCTTGTACCTCTTCTCTGAGGTTTTCCTCCGCTTGAGAGAAAAGACAGAGAAAAAAAAAAAATAGAAAGAATACAACCATTGGCATATTGGATTCCCGTGCAAAATGAGTTCAAACATATTTGAGTATGTTTGCATATATACCAAAAAAAAAAGGGAAGGATAACATTTTTATCCAGACCATTATCACCCTTGCTTTTTACTTTGTCAGTGGAGCCATTACCTCAAGCAATACATCAGTTATCAGCTACTCTCTTTAACATATTTGGTACACTTTCGGGCGTCACGGATGGTGTTGGGTTTTGTTTCATGTTTTATTTTGATGTTCGTGCTTATGGTTTCATGGTTTATTTTCTAGTTCATGTTGCATTGCTTTGTTTGCTTTGTCTGCCATGTGCTCCCCTTGTCATGTGTTCTATGGTGTCACGTTCTGATTGGTTCATTGTCTTGATTGTTCACAGGTGTCCCTTGTTAGTTATTAGTCTCTGTGCATTTAAGCCCTCAAGTTTGCCTTGTTCTTTGTCTAGTATTGTCCCTGTAATCACTGTGGTGAGTTTTCTTGTTGATGATTTTGTACCAAGCCAAACCAAGTCTTTGTTTTTTCAAGTTTGTTTTATGTTTGATCATGTGGATTTAAATAGAACTGCACCTTGGGTTCTCCTGAAACTTGTCTCAGTGGACTTATTACATCCAGTTACAAAATTAATTGGAATGAATCAGCATTAACGCCCCTTTACCTGTTAGCGTTCCACTGTACCGCTCGTGGTACACATACCTTTCAAAAGAGACTTTAGGAATGCTAAAGTGTTAAAGGGATAGTTCGCCCAAAAATGAAAATTCTGTCATTAAGTTAATCTTTGGAACACAAATTAAGATGTTTTTAATAAAACCTGATAAGCTCAATGATGCACAGTGTTGGGGGTAACGCATTACAAGTAATGCAAGTTATGTAATCAGATTACTTTTTTAAAGTAACTATAGTAAAGTAACGCATTAATTAAATTTACAAAATATCTGAGTTACTTTTTCAAATAAGCAACACAAGTTAAAAAAAACACCAAAATAACAACTGTATTCAACAGTTGTATTCAACAATATCTAGTGATGGGTGATTTCAAAACACTGCTTTATGAAGCTTCGAAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU58428 True 2349 TUCP 0.35 2 2255099 2350486

Neighbor

gene id symbol gene type direction distance location
CI01000009_02233367_02235148 RABL3 coding upstream 19306 2233367 ~ 2235793 (+)
CI01000009_02028234_02100154 PLCL1 coding upstream 154945 2028234 ~ 2100154 (+)
CI01000009_01993176_01999494 MOBL3, MOB4.S, HSPE1, MOB3, HSPE1-MOB4, MOB4 coding upstream 255226 1993176 ~ 1999873 (+)
CI01000009_01990700_01991267 HSP10, HSPE1 coding upstream 263712 1990700 ~ 1991387 (+)
CI01000009_01966898_01976924 COQ10B coding upstream 277365 1966898 ~ 1977734 (+)
CI01000009_02375481_02385887 NA coding downstream 24590 2375076 ~ 2386001 (+)
CI01000009_02398010_02399639 NA coding downstream 45579 2396065 ~ 2399752 (+)
CI01000009_02426085_02433745 CNGA4 coding downstream 75089 2425575 ~ 2433795 (+)
CI01000009_02449805_02450173 NHLH2 coding downstream 97511 2447997 ~ 2450356 (+)
CI01000009_02479541_02488142 VANGL1 coding downstream 129055 2479541 ~ 2488759 (+)
G51318 NA non-coding upstream 12767 2242125 ~ 2242332 (+)
G51267 NA non-coding upstream 25995 2227654 ~ 2229104 (+)
G51294 NA non-coding upstream 27640 2226894 ~ 2227459 (+)
G51311 NA non-coding upstream 43787 2211083 ~ 2211312 (+)
G51261 NA non-coding upstream 102712 2151887 ~ 2152387 (+)
G51358 NA non-coding downstream 17696 2368182 ~ 2368414 (+)
G51270 NA non-coding downstream 49292 2399778 ~ 2400894 (+)
G51272 NA non-coding downstream 50547 2401033 ~ 2401367 (+)
G51354 NA non-coding downstream 65214 2415700 ~ 2425283 (+)
G51368 NA non-coding downstream 77636 2428122 ~ 2428322 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 353673 1897343 ~ 1919516 (+)
G51122 NA other upstream 573133 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 816744 1429873 ~ 1435328 (+)
G50920 NA other upstream 1484866 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 2159312 94371 ~ 97230 (+)
G51529 NA other downstream 711547 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 852286 3202207 ~ 3208984 (+)
G53388 NA other downstream 3171756 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 3509816 5931718 ~ 5943899 (+)
G53651 NA other downstream 3895078 6245564 ~ 6248392 (+)

Expression


Co-expression Network